SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
661 O_BomoMG11019_3prime_partial:A_BomoMG_comp38532_c0_seq2
212bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
662 O_BomoMG1101_3prime_partial:A_BomoMG_comp19846_c0_seq1
425bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_cactin_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0009950 P dorsal/ventral axis specification
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
GO:0048812 P neuron projection morphogenesis
GO:0071013 C catalytic step 2 spliceosome
663 O_BomoMG11020_complete:A_BomoMG_comp38532_c0_seq2
155bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
664 O_BomoMG11021_complete:A_BomoMG_comp38532_c0_seq3
199bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
665 O_BomoMG11022_complete:A_BomoMG_comp38532_c0_seq3
163bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
666 O_BomoMG11023_complete:A_BomoMG_comp38532_c0_seq4
199bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
667 O_BomoMG11024_complete:A_BomoMG_comp38532_c0_seq4
155bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
668 O_BomoMG11025_complete:A_BomoMG_comp38532_c0_seq5
199bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
669 O_BomoMG11026_complete:A_BomoMG_comp38532_c0_seq5
163bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
670 O_BomoMG11027_3prime_partial:A_BomoMG_comp38532_c0_seq6
444bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
671 O_BomoMG11028_complete:A_BomoMG_comp38532_c0_seq7
431bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
672 O_BomoMG11029_3prime_partial:A_BomoMG_comp38532_c0_seq8
212bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
673 O_BomoMG11030_complete:A_BomoMG_comp38532_c0_seq8
163bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
674 O_BomoMG11031_complete:A_BomoMG_comp38532_c0_seq9
431bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
675 O_BomoMG11032_5prime_partial:A_BomoMG_comp38533_c1_seq1
673bp
 PREDICTED:_protein_purity_of_essence_[Bombyx_mori]
GO:0005516 F calmodulin binding
GO:0007275 P multicellular organism development
GO:0007286 P spermatid development
GO:0007291 P sperm individualization
GO:0007399 P nervous system development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0030154 P cell differentiation
GO:0042065 P glial cell growth
GO:0042066 P perineurial glial growth
GO:0043186 C P granule
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
676 O_BomoMG11035_internal:A_BomoMG_comp38536_c0_seq1
244bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
677 O_BomoMG11038_5prime_partial:A_BomoMG_comp38536_c1_seq1
145bp
 PREDICTED:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
678 O_BomoMG11039_internal:A_BomoMG_comp38536_c2_seq1
201bp
 PREDICTED:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
679 O_BomoMG1103_5prime_partial:A_BomoMG_comp19848_c0_seq1
192bp
 PREDICTED:_tRNA:m(4)X_modification_enzyme_TRM13_homolog_isoform_X2_[Bombyx_mori]
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
680 O_BomoMG11041_5prime_partial:A_BomoMG_comp38538_c0_seq1
162bp
 Mitogen-activated_protein_kinase_kinase_kinase_7_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0000187 P obsolete activation of MAPK activity
GO:0000287 F magnesium ion binding
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002726 P positive regulation of T cell cytokine production
GO:0002755 P MyD88-dependent toll-like receptor signaling pathway
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007223 P Wnt signaling pathway, calcium modulating pathway
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0007252 P I-kappaB phosphorylation
GO:0007254 P JNK cascade
GO:0008385 C IkappaB kinase complex
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032743 P positive regulation of interleukin-2 production
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043507 P positive regulation of JUN kinase activity
GO:0043966 P histone H3 acetylation
GO:0046872 F metal ion binding
GO:0050852 P T cell receptor signaling pathway
GO:0050870 P positive regulation of T cell activation
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051403 P stress-activated MAPK cascade
GO:0070423 P nucleotide-binding oligomerization domain containing signaling pathway
GO:0097110 F scaffold protein binding
681 O_BomoMG11042_5prime_partial:A_BomoMG_comp38538_c0_seq2
720bp
 PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_7-like_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0000187 P obsolete activation of MAPK activity
GO:0002726 P positive regulation of T cell cytokine production
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0007252 P I-kappaB phosphorylation
GO:0007254 P JNK cascade
GO:0008385 C IkappaB kinase complex
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032743 P positive regulation of interleukin-2 production
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043507 P positive regulation of JUN kinase activity
GO:0043966 P histone H3 acetylation
GO:0046872 F metal ion binding
GO:0051403 P stress-activated MAPK cascade
GO:0097110 F scaffold protein binding
682 O_BomoMG11044_5prime_partial:A_BomoMG_comp38538_c0_seq3
528bp
 PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_7_isoform_X2_[Amyelois_transitella]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0000187 P obsolete activation of MAPK activity
GO:0001525 P angiogenesis
GO:0001841 P neural tube formation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007252 P I-kappaB phosphorylation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043507 P positive regulation of JUN kinase activity
GO:0046330 P positive regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0060546 P negative regulation of necroptotic process
GO:0097110 F scaffold protein binding
GO:0097481 C postsynaptic density
GO:1902443 P negative regulation of ripoptosome assembly involved in necroptotic process
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2000378 P negative regulation of reactive oxygen species metabolic process
GO:2001234 P negative regulation of apoptotic signaling pathway
683 O_BomoMG11046_complete:A_BomoMG_comp38540_c0_seq1
398bp
 PREDICTED:_transmembrane_protein_135-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0007031 P peroxisome organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
684 O_BomoMG11047_3prime_partial:A_BomoMG_comp38540_c0_seq2
329bp
 PREDICTED:_transmembrane_protein_135-like_isoform_X2_[Bombyx_mori]
GO:0005777 C peroxisome
GO:0016020 C membrane
GO:0016021 C integral component of membrane
685 O_BomoMG11048_internal:A_BomoMG_comp38541_c1_seq1
130bp
 PREDICTED:_focadhesin_isoform_X1_[Bombyx_mori]
686 O_BomoMG11049_internal:A_BomoMG_comp38541_c2_seq1
312bp
 PREDICTED:_focadhesin_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005925 C focal adhesion
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
687 O_BomoMG11057_complete:A_BomoMG_comp38543_c0_seq1
267bp
 PREDICTED:_NAD(P)H-hydrate_epimerase_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
688 O_BomoMG11058_complete:A_BomoMG_comp38543_c0_seq2
244bp
 PREDICTED:_NAD(P)H-hydrate_epimerase_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
689 O_BomoMG11059_complete:A_BomoMG_comp38545_c0_seq1
174bp
 PREDICTED:_lactoylglutathione_lyase_[Papilio_polytes]
GO:0004462 F lactoylglutathione lyase activity
GO:0005975 P carbohydrate metabolic process
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006749 P glutathione metabolic process
GO:0008270 F zinc ion binding
GO:0009438 P methylglyoxal metabolic process
GO:0016829 F lyase activity
GO:0030316 P osteoclast differentiation
GO:0043066 P negative regulation of apoptotic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
690 O_BomoMG1105_complete:A_BomoMG_comp19855_c0_seq1
381bp
 PREDICTED:_la_protein_homolog_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0030529 C ribonucleoprotein complex
previous next from show/16985

- SilkBase 1999-2023 -