SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5311 O_BomoMG18949_complete:A_BomoMG_comp40551_c0_seq1
646bp
GO:0005308 F creatine transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015129 F lactate transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035879 P plasma membrane lactate transport
GO:0055085 P transmembrane transport
GO:1902598 P creatine transmembrane transport
5312 O_BomoMG1894_complete:A_BomoMG_comp20967_c0_seq1
409bp
 putative_tRNA_N6-adenosine_threonylcarbamoyltransferase,_mitochondrial_[Operophtera_brumata]
GO:0000408 C EKC/KEOPS complex
GO:0002949 P tRNA threonylcarbamoyladenosine modification
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008033 P tRNA processing
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046872 F metal ion binding
GO:0061711 F N(6)-L-threonylcarbamoyladenine synthase activity
5313 O_BomoMG18950_5prime_partial:A_BomoMG_comp40551_c0_seq1
116bp
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015129 F lactate transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035879 P plasma membrane lactate transport
GO:0055085 P transmembrane transport
5314 O_BomoMG18951_5prime_partial:A_BomoMG_comp40551_c0_seq2
776bp
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
5315 O_BomoMG18952_complete:A_BomoMG_comp40552_c0_seq1
354bp
GO:0000166 F nucleotide binding
GO:0001664 F G protein-coupled receptor binding
GO:0003924 F GTPase activity
GO:0004871 F obsolete signal transducer activity
GO:0005525 F GTP binding
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008152 P metabolic process
GO:0019001 F guanyl nucleotide binding
GO:0031683 F G-protein beta/gamma-subunit complex binding
GO:0046872 F metal ion binding
5316 O_BomoMG18954_complete:A_BomoMG_comp40552_c0_seq2
354bp
GO:0000166 F nucleotide binding
GO:0001664 F G protein-coupled receptor binding
GO:0003924 F GTPase activity
GO:0004871 F obsolete signal transducer activity
GO:0005525 F GTP binding
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008152 P metabolic process
GO:0019001 F guanyl nucleotide binding
GO:0031683 F G-protein beta/gamma-subunit complex binding
GO:0046872 F metal ion binding
5317 O_BomoMG18956_complete:A_BomoMG_comp40553_c1_seq1
631bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5318 O_BomoMG18958_complete:A_BomoMG_comp40553_c1_seq3
409bp
GO:0000287 F magnesium ion binding
GO:0004450 F isocitrate dehydrogenase (NADP+) activity
GO:0005737 C cytoplasm
GO:0006097 P glyoxylate cycle
GO:0006099 P tricarboxylic acid cycle
GO:0006102 P isocitrate metabolic process
GO:0006103 P 2-oxoglutarate metabolic process
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
5319 O_BomoMG1895_complete:A_BomoMG_comp20970_c0_seq1
260bp
 PREDICTED:_leucine-rich_repeat-containing_protein_26_[Papilio_polytes]
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045773 P positive regulation of axon extension
5320 O_BomoMG18960_complete:A_BomoMG_comp40553_c1_seq5
621bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5321 O_BomoMG18962_complete:A_BomoMG_comp40553_c1_seq7
631bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5322 O_BomoMG18964_complete:A_BomoMG_comp40553_c1_seq8
621bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5323 O_BomoMG18966_complete:A_BomoMG_comp40553_c1_seq9
631bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5324 O_BomoMG18968_complete:A_BomoMG_comp40553_c1_seq10
621bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5325 O_BomoMG18970_complete:A_BomoMG_comp40553_c1_seq11
621bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5326 O_BomoMG18972_complete:A_BomoMG_comp40553_c1_seq13
409bp
GO:0000287 F magnesium ion binding
GO:0004450 F isocitrate dehydrogenase (NADP+) activity
GO:0005737 C cytoplasm
GO:0006097 P glyoxylate cycle
GO:0006099 P tricarboxylic acid cycle
GO:0006102 P isocitrate metabolic process
GO:0006103 P 2-oxoglutarate metabolic process
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
5327 O_BomoMG18974_complete:A_BomoMG_comp40553_c1_seq15
631bp
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0008599 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0050790 P regulation of catalytic activity
5328 O_BomoMG18976_3prime_partial:A_BomoMG_comp40554_c0_seq1
333bp
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
5329 O_BomoMG18978_5prime_partial:A_BomoMG_comp40554_c0_seq2
138bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0009299 P mRNA transcription
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0030529 C ribonucleoprotein complex
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 F pre-mRNA binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 F RNA binding
GO:0045667 P regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0050681 F androgen receptor binding
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2001014 P regulation of skeletal muscle cell differentiation
5330 O_BomoMG18979_5prime_partial:A_BomoMG_comp40554_c0_seq3
295bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009791 P post-embryonic development
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030331 F estrogen receptor binding
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0072358 P circulatory system development
GO:2001014 P regulation of skeletal muscle cell differentiation
5331 O_BomoMG18980_5prime_partial:A_BomoMG_comp40554_c0_seq4
135bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0009299 P mRNA transcription
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0030529 C ribonucleoprotein complex
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 F pre-mRNA binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 F RNA binding
GO:0045667 P regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0050681 F androgen receptor binding
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2001014 P regulation of skeletal muscle cell differentiation
5332 O_BomoMG18981_complete:A_BomoMG_comp40554_c0_seq4
120bp
5333 O_BomoMG18982_3prime_partial:A_BomoMG_comp40554_c0_seq5
333bp
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
5334 O_BomoMG18984_5prime_partial:A_BomoMG_comp40554_c0_seq6
296bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009791 P post-embryonic development
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030331 F estrogen receptor binding
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0072358 P circulatory system development
GO:2001014 P regulation of skeletal muscle cell differentiation
5335 O_BomoMG18985_5prime_partial:A_BomoMG_comp40554_c0_seq7
137bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0009299 P mRNA transcription
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0030529 C ribonucleoprotein complex
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 F pre-mRNA binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 F RNA binding
GO:0045667 P regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0050681 F androgen receptor binding
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2001014 P regulation of skeletal muscle cell differentiation
5336 O_BomoMG18986_5prime_partial:A_BomoMG_comp40554_c0_seq8
134bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0009299 P mRNA transcription
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0030529 C ribonucleoprotein complex
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 F pre-mRNA binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 F RNA binding
GO:0045667 P regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0050681 F androgen receptor binding
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2001014 P regulation of skeletal muscle cell differentiation
5337 O_BomoMG18987_complete:A_BomoMG_comp40554_c0_seq8
120bp
5338 O_BomoMG18988_complete:A_BomoMG_comp40555_c0_seq1
687bp
5339 O_BomoMG18989_3prime_partial:A_BomoMG_comp40555_c0_seq2
150bp
5340 O_BomoMG1898_complete:A_BomoMG_comp20970_c0_seq2
407bp
 PREDICTED:_leucine-rich_repeat_transmembrane_neuronal_protein_4_[Papilio_machaon]
GO:0002091 P negative regulation of receptor internalization
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0042043 F neurexin family protein binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050808 P synapse organization
GO:0051965 P positive regulation of synapse assembly
GO:0060076 C excitatory synapse
GO:0060291 P long-term synaptic potentiation
previous next from show/16985

- SilkBase 1999-2023 -