SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1201 O_BomoMG11836_5prime_partial:A_BomoMG_comp38897_c0_seq2
397bp
 D-malate_degradation_protein_R_[Serratia_marcescens]
1202 O_BomoMG11837_5prime_partial:A_BomoMG_comp38897_c0_seq2
329bp
1203 O_BomoMG11839_3prime_partial:A_BomoMG_comp38897_c1_seq1
160bp
 PREDICTED:_tyrosine-protein_kinase_Abl_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001764 P neuron migration
GO:0002009 P morphogenesis of an epithelium
GO:0003382 P epithelial cell morphogenesis
GO:0003402 P planar cell polarity pathway involved in axis elongation
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0005927 C muscle tendon junction
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0007303 P cytoplasmic transport, nurse cell to oocyte
GO:0007370 P ventral furrow formation
GO:0007391 P dorsal closure
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007611 P learning or memory
GO:0008045 P motor neuron axon guidance
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008360 P regulation of cell shape
GO:0010592 P positive regulation of lamellipodium assembly
GO:0010906 P regulation of glucose metabolic process
GO:0010977 P negative regulation of neuron projection development
GO:0016199 P axon midline choice point recognition
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019897 C extrinsic component of plasma membrane
GO:0021785 P branchiomotor neuron axon guidance
GO:0030424 C axon
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0031647 P regulation of protein stability
GO:0032880 P regulation of protein localization
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042127 P regulation of cell population proliferation
GO:0045087 P innate immune response
GO:0045179 C apical cortex
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046827 P positive regulation of protein export from nucleus
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0070938 C contractile ring
GO:0072499 P photoreceptor cell axon guidance
1204 O_BomoMG11841_3prime_partial:A_BomoMG_comp38898_c0_seq1
175bp
 PREDICTED:_regulator_of_chromosome_condensation-like_isoform_X1_[Papilio_machaon]
GO:0000793 C condensed chromosome
GO:0003682 F chromatin binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005087 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006607 P NLS-bearing protein import into nucleus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0007346 P regulation of mitotic cell cycle
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0022008 P neurogenesis
GO:0043547 P positive regulation of GTPase activity
GO:0046822 P regulation of nucleocytoplasmic transport
GO:0050767 P regulation of neurogenesis
GO:0051301 P cell division
1205 O_BomoMG11842_5prime_partial:A_BomoMG_comp38898_c0_seq2
386bp
 PREDICTED:_regulator_of_chromosome_condensation_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0031492 F nucleosomal DNA binding
GO:0043547 P positive regulation of GTPase activity
GO:0051225 P spindle assembly
GO:0051301 P cell division
1206 O_BomoMG11844_3prime_partial:A_BomoMG_comp38898_c0_seq3
175bp
 PREDICTED:_regulator_of_chromosome_condensation-like_isoform_X1_[Papilio_machaon]
GO:0000793 C condensed chromosome
GO:0003682 F chromatin binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005087 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006607 P NLS-bearing protein import into nucleus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0007346 P regulation of mitotic cell cycle
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0022008 P neurogenesis
GO:0043547 P positive regulation of GTPase activity
GO:0046822 P regulation of nucleocytoplasmic transport
GO:0050767 P regulation of neurogenesis
GO:0051301 P cell division
1207 O_BomoMG11845_3prime_partial:A_BomoMG_comp38900_c0_seq2
331bp
 PREDICTED:_methyltransferase-like_protein_9_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1208 O_BomoMG11846_3prime_partial:A_BomoMG_comp38900_c0_seq3
244bp
 PREDICTED:_methyltransferase-like_protein_9_[Bombyx_mori]
1209 O_BomoMG11847_3prime_partial:A_BomoMG_comp38901_c0_seq1
492bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
1210 O_BomoMG11848_3prime_partial:A_BomoMG_comp38901_c0_seq2
485bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
1211 O_BomoMG11849_3prime_partial:A_BomoMG_comp38901_c0_seq3
551bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
1212 O_BomoMG1184_5prime_partial:A_BomoMG_comp19986_c0_seq1
123bp
 PREDICTED:_protein_fem-1_homolog_CG6966_isoform_X2_[Papilio_machaon]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0016567 P protein ubiquitination
GO:0051438 P regulation of ubiquitin-protein transferase activity
1213 O_BomoMG11850_3prime_partial:A_BomoMG_comp38901_c0_seq4
352bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
1214 O_BomoMG11851_3prime_partial:A_BomoMG_comp38901_c0_seq5
544bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
1215 O_BomoMG11852_complete:A_BomoMG_comp38902_c0_seq2
257bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1216 O_BomoMG11853_complete:A_BomoMG_comp38902_c0_seq2
167bp
1217 O_BomoMG11856_complete:A_BomoMG_comp38902_c0_seq3
167bp
1218 O_BomoMG11859_complete:A_BomoMG_comp38902_c0_seq4
158bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1219 O_BomoMG11862_complete:A_BomoMG_comp38902_c0_seq5
213bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
1220 O_BomoMG11863_complete:A_BomoMG_comp38902_c0_seq6
353bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1221 O_BomoMG11866_complete:A_BomoMG_comp38903_c0_seq1
149bp
 PREDICTED:_centromere_protein_S-like_[Papilio_xuthus]
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0031297 P replication fork processing
GO:0031398 P positive regulation of protein ubiquitination
GO:0034080 P CENP-A containing chromatin assembly
GO:0036297 P interstrand cross-link repair
GO:0043240 C Fanconi anaemia nuclear complex
GO:0046982 F protein heterodimerization activity
GO:0051301 P cell division
GO:0071821 C FANCM-MHF complex
1222 O_BomoMG11867_5prime_partial:A_BomoMG_comp38904_c0_seq1
644bp
 PREDICTED:_phosphoribosylformylglycinamidine_synthase_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0004642 F phosphoribosylformylglycinamidine synthase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0009156 P ribonucleoside monophosphate biosynthetic process
GO:0016874 F ligase activity
GO:0042493 P response to xenobiotic stimulus
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
1223 O_BomoMG11868_3prime_partial:A_BomoMG_comp38904_c0_seq2
720bp
 PREDICTED:_phosphoribosylformylglycinamidine_synthase_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0004642 F phosphoribosylformylglycinamidine synthase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0009156 P ribonucleoside monophosphate biosynthetic process
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
1224 O_BomoMG11869_3prime_partial:A_BomoMG_comp38905_c0_seq1
246bp
 hypothetical_protein_M514_27121_[Trichuris_suis]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1225 O_BomoMG11870_complete:A_BomoMG_comp38905_c0_seq1
153bp
 conserved_hypothetical_protein_[Trichinella_spiralis]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
1226 O_BomoMG11871_5prime_partial:A_BomoMG_comp38906_c0_seq1
438bp
 PREDICTED:_G-protein-signaling_modulator_2_isoform_X1_[Amyelois_transitella]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000166 F nucleotide binding
GO:0000922 C spindle pole
GO:0001965 F G-protein alpha-subunit binding
GO:0005092 F GDP-dissociation inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005938 C cell cortex
GO:0007052 P mitotic spindle organization
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0030695 F GTPase regulator activity
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0050790 P regulation of catalytic activity
GO:0051661 P maintenance of centrosome location
GO:0060487 P lung epithelial cell differentiation
GO:0097431 C mitotic spindle pole
1227 O_BomoMG11873_complete:A_BomoMG_comp38906_c0_seq2
140bp
 PREDICTED:_G-protein-signaling_modulator_2_isoform_X2_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0005092 F GDP-dissociation inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008277 P regulation of G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0030154 P cell differentiation
GO:0030695 F GTPase regulator activity
GO:0050790 P regulation of catalytic activity
1228 O_BomoMG11874_5prime_partial:A_BomoMG_comp38907_c0_seq1
371bp
 PREDICTED:_ubiquitin-protein_ligase_E3B_[Amyelois_transitella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
1229 O_BomoMG11876_5prime_partial:A_BomoMG_comp38907_c0_seq3
167bp
 putative_ubiquitin-protein_ligase_[Danaus_plexippus]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
1230 O_BomoMG11877_complete:A_BomoMG_comp38908_c0_seq1
121bp
 PREDICTED:_trans-Golgi_network_integral_membrane_protein_2_isoform_X1_[Myotis_davidii]
previous next from show/16985

- SilkBase 1999-2023 -