Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1231	O_BomoMG1187_complete:A_BomoMG_comp19990_c0_seq1 259bp	Bomo_Chr23	PREDICTED:_protein_FRG1_homolog_[Amyelois_transitella]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006364 P rRNA processing GO:0007517 P muscle organ development GO:0015030 C Cajal body GO:0030018 C Z disc GO:0031936 P obsolete negative regulation of chromatin silencing GO:0042254 P ribosome biogenesis GO:0051015 F actin filament binding GO:0055120 C striated muscle dense body GO:0070511 P negative regulation of histone H4-K20 methylation GO:0071013 C catalytic step 2 spliceosome
1232	O_BomoMG11880_complete:A_BomoMG_comp38908_c0_seq4 151bp	Bomo_Chr3	mitochondrial_transcription_factor_A_[Bombyx_mori]	GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001223 F transcription coactivator binding GO:0003677 F DNA binding GO:0003682 F chromatin binding GO:0003700 F DNA-binding transcription factor activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0005829 C cytosol GO:0006261 P DNA-dependent DNA replication GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006356 P regulation of transcription by RNA polymerase I GO:0006366 P transcription by RNA polymerase II GO:0006390 P mitochondrial transcription GO:0006391 P transcription initiation from mitochondrial promoter GO:0007005 P mitochondrion organization GO:0008301 F DNA binding, bending GO:0031072 F heat shock protein binding GO:0033108 P mitochondrial respiratory chain complex assembly GO:0042645 C mitochondrial nucleoid GO:0044822 F RNA binding GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0070363 F mitochondrial promoter sequence-specific DNA binding
1233	O_BomoMG11881_3prime_partial:A_BomoMG_comp38909_c0_seq1 998bp	Bomo_Chr17	PREDICTED:_meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0005777 C peroxisome GO:0010468 P regulation of gene expression GO:0030154 P cell differentiation GO:0048477 P oogenesis GO:0051321 P meiotic cell cycle
1234	O_BomoMG11884_complete:A_BomoMG_comp38910_c0_seq1 607bp	Bomo_Chr5	E3_ubiquitin-protein_ligase_Topors_[Papilio_xuthus]	GO:0000209 P protein polyubiquitination GO:0003677 F DNA binding GO:0005515 F protein binding GO:0005521 F lamin binding GO:0005634 C nucleus GO:0005652 C nuclear lamina GO:0005694 C chromosome GO:0005700 C polytene chromosome GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006997 P nucleus organization GO:0007060 P male meiosis chromosome segregation GO:0007095 P mitotic G2 DNA damage checkpoint signaling GO:0007140 P male meiotic nuclear division GO:0008270 F zinc ion binding GO:0010032 P meiotic chromosome condensation GO:0016568 P chromatin organization GO:0016874 F ligase activity GO:0042787 P ubiquitin-dependent protein catabolic process GO:0046872 F metal ion binding GO:0051299 P centrosome separation GO:0061630 F ubiquitin protein ligase activity GO:0071763 P nuclear membrane organization
1235	O_BomoMG11885_complete:A_BomoMG_comp38910_c0_seq2 589bp	Bomo_Chr5	E3_ubiquitin-protein_ligase_Topors_[Papilio_xuthus]	GO:0000209 P protein polyubiquitination GO:0003677 F DNA binding GO:0005515 F protein binding GO:0005521 F lamin binding GO:0005634 C nucleus GO:0005652 C nuclear lamina GO:0005694 C chromosome GO:0005700 C polytene chromosome GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006997 P nucleus organization GO:0007060 P male meiosis chromosome segregation GO:0007095 P mitotic G2 DNA damage checkpoint signaling GO:0007140 P male meiotic nuclear division GO:0008270 F zinc ion binding GO:0010032 P meiotic chromosome condensation GO:0016568 P chromatin organization GO:0016874 F ligase activity GO:0042787 P ubiquitin-dependent protein catabolic process GO:0046872 F metal ion binding GO:0051299 P centrosome separation GO:0061630 F ubiquitin protein ligase activity GO:0071763 P nuclear membrane organization
1236	O_BomoMG11886_5prime_partial:A_BomoMG_comp38913_c0_seq1 681bp	Bomo_Chr21	PREDICTED:_elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003924 F GTPase activity GO:0005525 F GTP binding GO:0005622 C intracellular anatomical structure GO:0006412 P translation GO:0008152 P metabolic process GO:0042254 P ribosome biogenesis GO:0042256 P mature ribosome assembly GO:0043022 F ribosome binding
1237	O_BomoMG11889_3prime_partial:A_BomoMG_comp38913_c1_seq1 388bp	Bomo_Chr21	PREDICTED:_elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003924 F GTPase activity GO:0005525 F GTP binding GO:0005622 C intracellular anatomical structure GO:0006412 P translation GO:0008152 P metabolic process GO:0042254 P ribosome biogenesis GO:0042256 P mature ribosome assembly GO:0043022 F ribosome binding
1238	O_BomoMG1188_3prime_partial:A_BomoMG_comp19994_c0_seq1 153bp	Bomo_Chr11	PREDICTED:_uncharacterized_protein_LOC101740483_[Bombyx_mori]
1239	O_BomoMG11890_complete:A_BomoMG_comp38915_c0_seq1 484bp	Bomo_Chr6	PREDICTED:_uncharacterized_protein_LOC106104287_[Papilio_polytes]	GO:0005515 F protein binding GO:0005654 C nucleoplasm GO:0005768 C endosome GO:0005794 C Golgi apparatus GO:0005802 C trans-Golgi network GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006895 P Golgi to endosome transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030133 C transport vesicle GO:0030140 C trans-Golgi network transport vesicle GO:0032588 C trans-Golgi network membrane
1240	O_BomoMG11891_internal:A_BomoMG_comp38916_c0_seq1 113bp	Bomo_Chr27	PREDICTED:_uncharacterized_protein_LOC101743028_[Bombyx_mori]
1241	O_BomoMG11892_3prime_partial:A_BomoMG_comp38916_c1_seq1 428bp	Bomo_Chr27	PREDICTED:_uncharacterized_protein_LOC101743028_[Bombyx_mori]
1242	O_BomoMG11893_internal:A_BomoMG_comp38916_c1_seq2 255bp	Bomo_Chr27	PREDICTED:_uncharacterized_protein_LOC101743028_[Bombyx_mori]
1243	O_BomoMG11894_5prime_partial:A_BomoMG_comp38917_c0_seq3 1223bp	Bomo_Chr5	PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
1244	O_BomoMG11895_complete:A_BomoMG_comp38918_c0_seq1 378bp	Bomo_Chr21	PREDICTED:_ubiquitin-like_protein_7_isoform_X2_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process
1245	O_BomoMG11896_complete:A_BomoMG_comp38918_c0_seq2 338bp	Bomo_Chr21	PREDICTED:_ubiquitin-like_protein_7_isoform_X2_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process
1246	O_BomoMG11897_internal:A_BomoMG_comp38919_c0_seq1 265bp	Bomo_Chr5	PREDICTED:_solute_carrier_family_12_member_6_isoform_X3_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005765 C lysosomal membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006813 P potassium ion transport GO:0006821 P chloride transport GO:0007268 P chemical synaptic transmission GO:0015293 F symporter activity GO:0015377 F cation:chloride symporter activity GO:0015379 F potassium:chloride symporter activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0019901 F protein kinase binding GO:0022820 F potassium:chloride symporter activity GO:0055085 P transmembrane transport GO:0071805 P potassium ion transmembrane transport GO:1902476 P chloride transmembrane transport
1247	O_BomoMG11899_complete:A_BomoMG_comp38920_c0_seq1 323bp	Bomo_Chr20	PREDICTED:_facilitated_trehalose_transporter_Tret1_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015574 F trehalose transmembrane transporter activity GO:0015767 P lactose transport GO:0015768 P maltose transport GO:0015770 P sucrose transport GO:0015771 P trehalose transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
1248	O_BomoMG1189_internal:A_BomoMG_comp19996_c0_seq1 121bp	Bomo_Chr12	PREDICTED:_transportin-3-like_[Plutella_xylostella]	GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006606 P protein import into nucleus GO:0006810 P transport GO:0008139 F nuclear localization sequence binding GO:0008565 F obsolete protein transporter activity GO:0015031 P protein transport GO:0031965 C nuclear membrane GO:0035048 P obsolete splicing factor protein import into nucleus GO:0042802 F identical protein binding GO:0043231 C intracellular membrane-bounded organelle
1249	O_BomoMG11901_complete:A_BomoMG_comp38920_c0_seq2 464bp	Bomo_Chr20	PREDICTED:_facilitated_trehalose_transporter_Tret1_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015574 F trehalose transmembrane transporter activity GO:0015771 P trehalose transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
1250	O_BomoMG11903_complete:A_BomoMG_comp38920_c0_seq3 358bp	Bomo_Chr20	PREDICTED:_facilitated_trehalose_transporter_Tret1_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015574 F trehalose transmembrane transporter activity GO:0015771 P trehalose transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
1251	O_BomoMG11905_complete:A_BomoMG_comp38920_c0_seq4 429bp	Bomo_Chr20	PREDICTED:_facilitated_trehalose_transporter_Tret1_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015574 F trehalose transmembrane transporter activity GO:0015771 P trehalose transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
1252	O_BomoMG11907_5prime_partial:A_BomoMG_comp38921_c0_seq2 359bp	Bomo_Chr10	Vacuolar_protein-sorting_protein_BRO1_[Operophtera_brumata]	GO:0000166 F nucleotide binding GO:0000340 F RNA 7-methylguanosine cap binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006370 P 7-methylguanosine mRNA capping GO:0006397 P mRNA processing GO:0006810 P transport GO:0051028 P mRNA transport
1253	O_BomoMG11908_complete:A_BomoMG_comp38922_c0_seq1 463bp	Bomo_Chr23	cyclin_dependent_kinase_8_[Bombyx_mori]	GO:0000082 P G1/S transition of mitotic cell cycle GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004693 F cyclin-dependent protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006468 P protein phosphorylation GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0051726 P regulation of cell cycle
1254	O_BomoMG11909_complete:A_BomoMG_comp38922_c0_seq2 328bp	Bomo_Chr23	cyclin_dependent_kinase_8_[Bombyx_mori]	GO:0000082 P G1/S transition of mitotic cell cycle GO:0000166 F nucleotide binding GO:0000278 P mitotic cell cycle GO:0001104 F transcription coregulator activity GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004693 F cyclin-dependent protein serine/threonine kinase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0006468 P protein phosphorylation GO:0007095 P mitotic G2 DNA damage checkpoint signaling GO:0007411 P axon guidance GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016592 C mediator complex GO:0016740 F transferase activity GO:0022416 P chaeta development GO:0034472 P snRNA 3'-end processing GO:0036011 P imaginal disc-derived leg segmentation GO:0045498 P sex comb development
1255	O_BomoMG11910_5prime_partial:A_BomoMG_comp38923_c0_seq2 279bp	Bomo_Chr4	PREDICTED:_uncharacterized_protein_LOC106693238_[Microplitis_demolitor]	GO:0005634 C nucleus
1256	O_BomoMG11912_3prime_partial:A_BomoMG_comp38924_c0_seq1 110bp	Bomo_Chr10	PREDICTED:_potassium_voltage-gated_channel_subfamily_H_member_8_isoform_X1_[Bombyx_mori]	GO:0000155 F phosphorelay sensor kinase activity GO:0000160 P phosphorelay signal transduction system GO:0005216 F ion channel activity GO:0005244 F voltage-gated ion channel activity GO:0005249 F voltage-gated potassium channel activity GO:0005267 F potassium channel activity GO:0005622 C intracellular anatomical structure GO:0005887 C integral component of plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006813 P potassium ion transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0023014 P signal transduction GO:0034765 P regulation of ion transmembrane transport GO:0042391 P regulation of membrane potential GO:0055085 P transmembrane transport GO:0071805 P potassium ion transmembrane transport
1257	O_BomoMG11913_5prime_partial:A_BomoMG_comp38924_c1_seq1 948bp	Bomo_Chr10	PREDICTED:_potassium_voltage-gated_channel_subfamily_H_member_8_isoform_X1_[Bombyx_mori]	GO:0000155 F phosphorelay sensor kinase activity GO:0000160 P phosphorelay signal transduction system GO:0005216 F ion channel activity GO:0005244 F voltage-gated ion channel activity GO:0005249 F voltage-gated potassium channel activity GO:0005267 F potassium channel activity GO:0005622 C intracellular anatomical structure GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006813 P potassium ion transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0023014 P signal transduction GO:0034765 P regulation of ion transmembrane transport GO:0042391 P regulation of membrane potential GO:0055085 P transmembrane transport GO:0071805 P potassium ion transmembrane transport
1258	O_BomoMG11914_internal:A_BomoMG_comp38925_c0_seq1 426bp	Bomo_Chr7	PREDICTED:_rho_GTPase-activating_protein_7_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005737 C cytoplasm GO:0005925 C focal adhesion GO:0007165 P signal transduction GO:0008289 F lipid binding GO:0016020 C membrane GO:0030054 C cell junction GO:0035023 P regulation of Rho protein signal transduction GO:0043547 P positive regulation of GTPase activity
1259	O_BomoMG11916_5prime_partial:A_BomoMG_comp38925_c0_seq2 133bp	Bomo_Chr7	PREDICTED:_rho_GTPase-activating_protein_7_[Bombyx_mori]
1260	O_BomoMG11917_3prime_partial:A_BomoMG_comp38927_c0_seq1 175bp	Bomo_Chr11	PREDICTED:_wiskott-Aldrich_syndrome_protein_family_member_2_[Bombyx_mori]