SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1141 O_BomoMG11753_5prime_partial:A_BomoMG_comp38860_c0_seq2
287bp
 PREDICTED:_uncharacterized_protein_LOC101737617_isoform_X4_[Bombyx_mori]
1142 O_BomoMG11756_internal:A_BomoMG_comp38861_c0_seq1
233bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_symplekin_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005848 C mRNA cleavage stimulating factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0035363 C histone locus body
1143 O_BomoMG11757_3prime_partial:A_BomoMG_comp38861_c0_seq2
534bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_symplekin_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005848 C mRNA cleavage stimulating factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0035363 C histone locus body
1144 O_BomoMG11759_internal:A_BomoMG_comp38861_c1_seq1
201bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_symplekin_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
1145 O_BomoMG11761_internal:A_BomoMG_comp38861_c2_seq1
151bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_symplekin_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0035307 P positive regulation of protein dephosphorylation
1146 O_BomoMG11762_internal:A_BomoMG_comp38862_c0_seq1
282bp
 PREDICTED:_uncharacterized_protein_LOC101736380_[Bombyx_mori]
1147 O_BomoMG11763_5prime_partial:A_BomoMG_comp38863_c0_seq1
368bp
 PREDICTED:_bifunctional_lysine-specific_demethylase_and_histidyl-hydroxylase_NO66_[Amyelois_transitella]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
1148 O_BomoMG11764_3prime_partial:A_BomoMG_comp38863_c2_seq1
244bp
 Lysine-specific_demethylase_NO66_[Operophtera_brumata]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
1149 O_BomoMG11765_complete:A_BomoMG_comp38864_c0_seq1
209bp
 PREDICTED:_ras-related_protein_Rab-18-like_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0001654 P eye development
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0008152 P metabolic process
GO:0009925 C basal plasma membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0019003 F GDP binding
GO:0034389 P lipid droplet organization
GO:0070062 C extracellular exosome
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
1150 O_BomoMG11766_complete:A_BomoMG_comp38864_c0_seq2
221bp
 PREDICTED:_ras-related_protein_Rab-18-like_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0001654 P eye development
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0034389 P lipid droplet organization
GO:0070062 C extracellular exosome
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
1151 O_BomoMG11767_5prime_partial:A_BomoMG_comp38865_c0_seq2
546bp
 PREDICTED:_synembryn_[Bombyx_mori]
GO:0001965 F G-protein alpha-subunit binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0043547 P positive regulation of GTPase activity
1152 O_BomoMG1176_5prime_partial:A_BomoMG_comp19971_c0_seq1
1124bp
 wing_disc-specific_protein_[Bombyx_mori]
1153 O_BomoMG11771_3prime_partial:A_BomoMG_comp38866_c0_seq1
207bp
 PREDICTED:_dysbindin_protein_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0008021 C synaptic vesicle
GO:0008057 P eye pigment granule organization
GO:0008344 P adult locomotory behavior
GO:0008355 P olfactory learning
GO:0031083 C BLOC-1 complex
GO:0045963 P negative regulation of dopamine metabolic process
GO:0048047 P mating behavior, sex discrimination
GO:0048167 P regulation of synaptic plasticity
GO:0050807 P regulation of synapse organization
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
1154 O_BomoMG11772_3prime_partial:A_BomoMG_comp38866_c0_seq2
207bp
 PREDICTED:_dysbindin_protein_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0008021 C synaptic vesicle
GO:0008057 P eye pigment granule organization
GO:0008344 P adult locomotory behavior
GO:0008355 P olfactory learning
GO:0031083 C BLOC-1 complex
GO:0045963 P negative regulation of dopamine metabolic process
GO:0048047 P mating behavior, sex discrimination
GO:0048167 P regulation of synaptic plasticity
GO:0050807 P regulation of synapse organization
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
1155 O_BomoMG11773_complete:A_BomoMG_comp38867_c0_seq1
174bp
 myosin_light_polypeptide_9_isoform_B_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0001736 P establishment of planar polarity
GO:0003384 P apical constriction involved in gastrulation
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0005938 C cell cortex
GO:0007298 P border follicle cell migration
GO:0007300 P ovarian nurse cell to oocyte transport
GO:0016324 C apical plasma membrane
GO:0016459 C myosin complex
GO:0016460 C myosin II complex
GO:0019749 P cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte
GO:0022008 P neurogenesis
GO:0030048 P actin filament-based movement
GO:0030496 C midbody
GO:0030707 P ovarian follicle cell development
GO:0031036 P myosin II filament assembly
GO:0031941 C filamentous actin
GO:0032036 F myosin heavy chain binding
GO:0032154 C cleavage furrow
GO:0032956 P regulation of actin cytoskeleton organization
GO:0035148 P tube formation
GO:0035159 P regulation of tube length, open tracheal system
GO:0035183 C female germline ring canal inner rim
GO:0035191 P nuclear axial expansion
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035317 P imaginal disc-derived wing hair organization
GO:0042060 P wound healing
GO:0045177 C apical part of cell
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051233 C spindle midzone
GO:0060288 P formation of a compartment boundary
GO:0090254 P cell elongation involved in imaginal disc-derived wing morphogenesis
1156 O_BomoMG11774_complete:A_BomoMG_comp38867_c0_seq2
174bp
 myosin_light_polypeptide_9_isoform_B_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0001736 P establishment of planar polarity
GO:0003384 P apical constriction involved in gastrulation
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0005938 C cell cortex
GO:0007298 P border follicle cell migration
GO:0007300 P ovarian nurse cell to oocyte transport
GO:0016324 C apical plasma membrane
GO:0016459 C myosin complex
GO:0016460 C myosin II complex
GO:0019749 P cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte
GO:0022008 P neurogenesis
GO:0030048 P actin filament-based movement
GO:0030496 C midbody
GO:0030707 P ovarian follicle cell development
GO:0031036 P myosin II filament assembly
GO:0031941 C filamentous actin
GO:0032036 F myosin heavy chain binding
GO:0032154 C cleavage furrow
GO:0032956 P regulation of actin cytoskeleton organization
GO:0035148 P tube formation
GO:0035159 P regulation of tube length, open tracheal system
GO:0035183 C female germline ring canal inner rim
GO:0035191 P nuclear axial expansion
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035317 P imaginal disc-derived wing hair organization
GO:0042060 P wound healing
GO:0045177 C apical part of cell
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051233 C spindle midzone
GO:0060288 P formation of a compartment boundary
GO:0090254 P cell elongation involved in imaginal disc-derived wing morphogenesis
1157 O_BomoMG11775_internal:A_BomoMG_comp38868_c1_seq2
678bp
 PREDICTED:_biorientation_of_chromosomes_in_cell_division_protein_1-like_1_isoform_X1_[Bombyx_mori]
1158 O_BomoMG11778_internal:A_BomoMG_comp38868_c1_seq3
644bp
 PREDICTED:_biorientation_of_chromosomes_in_cell_division_protein_1-like_1_isoform_X2_[Bombyx_mori]
1159 O_BomoMG1177_5prime_partial:A_BomoMG_comp19971_c0_seq2
1157bp
 wing_disc-specific_protein_[Bombyx_mori]
1160 O_BomoMG11781_internal:A_BomoMG_comp38868_c2_seq1
169bp
 PREDICTED:_biorientation_of_chromosomes_in_cell_division_protein_1-like_1_isoform_X2_[Bombyx_mori]
1161 O_BomoMG11784_complete:A_BomoMG_comp38870_c1_seq1
343bp
 PREDICTED:_glutaminyl-peptide_cyclotransferase-like_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008270 F zinc ion binding
GO:0016603 F glutaminyl-peptide cyclotransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0017186 P peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase
GO:0046872 F metal ion binding
1162 O_BomoMG11786_complete:A_BomoMG_comp38871_c0_seq1
236bp
 PREDICTED:_pyridoxal_phosphate_phosphatase_PHOSPHO2-like_[Papilio_xuthus]
GO:0005575 C cellular_component
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030500 P regulation of bone mineralization
GO:0035630 P bone mineralization involved in bone maturation
GO:0046872 F metal ion binding
1163 O_BomoMG11788_5prime_partial:A_BomoMG_comp38873_c0_seq1
230bp
 PREDICTED:_mitochondrial-processing_peptidase_subunit_alpha_[Amyelois_transitella]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1164 O_BomoMG11789_internal:A_BomoMG_comp38873_c1_seq1
232bp
 PREDICTED:_mitochondrial-processing_peptidase_subunit_alpha_[Plutella_xylostella]
GO:0003824 F catalytic activity
GO:0004175 F endopeptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005615 C extracellular space
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1165 O_BomoMG1178_complete:A_BomoMG_comp19975_c0_seq1
411bp
 PREDICTED:_tetracycline_resistance_protein,_class_D-like_[Amyelois_transitella]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
1166 O_BomoMG11790_internal:A_BomoMG_comp38873_c1_seq2
133bp
 Uncharacterized_protein_OBRU01_01673_[Operophtera_brumata]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005615 C extracellular space
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1167 O_BomoMG11791_internal:A_BomoMG_comp38874_c0_seq1
339bp
 PREDICTED:_PRKCA-binding_protein_isoform_X2_[Bombyx_mori]
GO:0001664 F G protein-coupled receptor binding
GO:0002092 P positive regulation of receptor internalization
GO:0003779 F actin binding
GO:0005080 F protein kinase C binding
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007205 P protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0008022 F protein C-terminus binding
GO:0010629 P negative regulation of gene expression
GO:0014069 C postsynaptic density
GO:0015844 P monoamine transport
GO:0015872 P dopamine transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0019904 F protein domain specific binding
GO:0021782 P glial cell development
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0030971 F receptor tyrosine kinase binding
GO:0034316 P negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0035256 F G protein-coupled glutamate receptor binding
GO:0036294 P cellular response to decreased oxygen levels
GO:0042149 P cellular response to glucose starvation
GO:0042734 C presynaptic membrane
GO:0042802 F identical protein binding
GO:0043005 C neuron projection
GO:0043113 P receptor clustering
GO:0043234 C protein-containing complex
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046872 F metal ion binding
GO:0046875 F ephrin receptor binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0051020 F GTPase binding
GO:0060292 P long-term synaptic depression
GO:0060548 P negative regulation of cell death
GO:0071933 F Arp2/3 complex binding
GO:0097061 P dendritic spine organization
GO:0097062 P dendritic spine maintenance
1168 O_BomoMG11792_internal:A_BomoMG_comp38874_c1_seq1
151bp
 PREDICTED:_PRKCA-binding_protein_isoform_X2_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0019904 F protein domain specific binding
GO:0021782 P glial cell development
GO:0030054 C cell junction
GO:0034315 P regulation of Arp2/3 complex-mediated actin nucleation
GO:0034316 P negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0036294 P cellular response to decreased oxygen levels
GO:0042149 P cellular response to glucose starvation
GO:0043005 C neuron projection
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0060292 P long-term synaptic depression
GO:0071933 F Arp2/3 complex binding
GO:0097061 P dendritic spine organization
GO:0097062 P dendritic spine maintenance
1169 O_BomoMG11793_complete:A_BomoMG_comp38875_c0_seq1
264bp
 PREDICTED:_rab-related_protein_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005769 C early endosome
GO:0005802 C trans-Golgi network
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019882 P antigen processing and presentation
GO:0030670 C phagocytic vesicle membrane
GO:0030742 F GTP-dependent protein binding
GO:0031410 C cytoplasmic vesicle
GO:0031905 C early endosome lumen
GO:0035612 F AP-2 adaptor complex binding
GO:0035646 P endosome to melanosome transport
GO:0035650 F AP-1 adaptor complex binding
GO:0035651 F AP-3 adaptor complex binding
GO:0036461 F BLOC-2 complex binding
GO:0042470 C melanosome
GO:0045335 C phagocytic vesicle
GO:0090382 P phagosome maturation
GO:1903232 P melanosome assembly
1170 O_BomoMG11794_complete:A_BomoMG_comp38875_c0_seq2
232bp
 Rab-related_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005769 C early endosome
GO:0005802 C trans-Golgi network
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019882 P antigen processing and presentation
GO:0030670 C phagocytic vesicle membrane
GO:0030742 F GTP-dependent protein binding
GO:0031410 C cytoplasmic vesicle
GO:0031905 C early endosome lumen
GO:0035612 F AP-2 adaptor complex binding
GO:0035646 P endosome to melanosome transport
GO:0035650 F AP-1 adaptor complex binding
GO:0035651 F AP-3 adaptor complex binding
GO:0036461 F BLOC-2 complex binding
GO:0042470 C melanosome
GO:0045335 C phagocytic vesicle
GO:0090382 P phagosome maturation
GO:1903232 P melanosome assembly
previous next from show/16985

- SilkBase 1999-2023 -