Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
10411	O_BomoMG27999_3prime_partial:A_BomoMG_comp128441_c0_seq1 285bp	Bomo_Chr24	PREDICTED:_protein_mahjong_isoform_X2_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0016567 P protein ubiquitination GO:0035212 P cell competition in a multicellular organism
10412	O_BomoMG2799_complete:A_BomoMG_comp22381_c0_seq1 323bp	Bomo_Chr27	PREDICTED:_uncharacterized_protein_LOC106138040_isoform_X1_[Amyelois_transitella]	GO:0000932 C P-body GO:0002376 P immune system process GO:0005080 F protein kinase C binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005764 C lysosome GO:0005768 C endosome GO:0005770 C late endosome GO:0005776 C autophagosome GO:0005783 C endoplasmic reticulum GO:0006914 P autophagy GO:0006915 P apoptotic process GO:0008270 F zinc ion binding GO:0016236 P macroautophagy GO:0030154 P cell differentiation GO:0031410 C cytoplasmic vesicle GO:0042169 F SH2 domain binding GO:0043122 P regulation of I-kappaB kinase/NF-kappaB signaling GO:0043130 F ubiquitin binding GO:0046872 F metal ion binding
10413	O_BomoMG27_5prime_partial:A_BomoMG_comp16973_c0_seq1 108bp	Bomo_Chr25	Ataxin-7-like_protein_3_[Papilio_machaon]	GO:0000124 C SAGA complex GO:0003713 F transcription coactivator activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0008270 F zinc ion binding GO:0016568 P chromatin organization GO:0016578 P histone deubiquitination GO:0045893 P positive regulation of transcription, DNA-templated GO:0046872 F metal ion binding GO:0071819 C DUBm complex
10414	O_BomoMG28001_internal:A_BomoMG_comp128773_c0_seq1 144bp	Bomo_Chr17	PREDICTED:_uncharacterized_protein_LOC105842669_[Bombyx_mori]
10415	O_BomoMG28002_complete:A_BomoMG_comp129375_c0_seq1 332bp	Bomo_Chr2	PREDICTED:_aldo-keto_reductase_AKR2E4-like_[Papilio_machaon]	GO:0006629 P lipid metabolic process GO:0008202 P steroid metabolic process GO:0016491 F oxidoreductase activity GO:0055114 P obsolete oxidation-reduction process
10416	O_BomoMG28003_complete:A_BomoMG_comp129541_c0_seq1 378bp	Bomo_Chr2	PREDICTED:_BTB/POZ_domain-containing_protein_10_[Papilio_polytes]	GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0042327 P positive regulation of phosphorylation GO:1901215 P negative regulation of neuron death
10417	O_BomoMG28004_complete:A_BomoMG_comp129684_c0_seq1 139bp	Bomo_Chr23	LSM1-like_protein_[Bombyx_mori]	GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000339 F RNA cap binding GO:0000932 C P-body GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0019827 P stem cell population maintenance GO:0030529 C ribonucleoprotein complex GO:0044822 F RNA binding GO:0045665 P negative regulation of neuron differentiation GO:0071044 P histone mRNA catabolic process
10418	O_BomoMG28005_complete:A_BomoMG_comp129697_c0_seq1 629bp	Bomo_Chr17	poly(A)-specific_ribonuclease_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0004518 F nuclease activity GO:0004527 F exonuclease activity GO:0004535 F poly(A)-specific ribonuclease activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006402 P mRNA catabolic process GO:0016787 F hydrolase activity GO:0046872 F metal ion binding GO:0051321 P meiotic cell cycle GO:0090305 P nucleic acid phosphodiester bond hydrolysis GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
10419	O_BomoMG28008_5prime_partial:A_BomoMG_comp129834_c0_seq1 273bp	Bomo_Chr8	PREDICTED:_ATP-dependent_RNA_helicase_DDX42_[Papilio_polytes]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0008152 P metabolic process GO:0016787 F hydrolase activity
10420	O_BomoMG28009_3prime_partial:A_BomoMG_comp129879_c0_seq1 305bp	Bomo_Chr14	PREDICTED:_probable_nucleoporin_Nup58_[Bombyx_mori]	GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery GO:0003723 F RNA binding GO:0005487 F structural constituent of nuclear pore GO:0005515 F protein binding GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005643 C nuclear pore GO:0006405 P RNA export from nucleus GO:0006606 P protein import into nucleus GO:0006810 P transport GO:0008139 F nuclear localization sequence binding GO:0015031 P protein transport GO:0017056 F structural constituent of nuclear pore GO:0034398 P telomere tethering at nuclear periphery GO:0044614 C nuclear pore cytoplasmic filaments GO:0051028 P mRNA transport
10421	O_BomoMG2800_5prime_partial:A_BomoMG_comp22388_c0_seq1 130bp	Bomo_Chr14	PREDICTED:_uncharacterized_protein_LOC101740850_isoform_X1_[Bombyx_mori]
10422	O_BomoMG28010_internal:A_BomoMG_comp129958_c0_seq1 360bp	Bomo_Chr15	PREDICTED:_LOW_QUALITY_PROTEIN:_bromodomain-containing_protein_4-like_[Bombyx_mori]	GO:0003677 F DNA binding GO:0004672 F protein kinase activity GO:0005634 C nucleus GO:0006357 P regulation of transcription by RNA polymerase II GO:0006468 P protein phosphorylation GO:0007275 P multicellular organism development GO:0007362 P terminal region determination GO:0007476 P imaginal disc-derived wing morphogenesis GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter GO:0045892 P negative regulation of transcription, DNA-templated
10423	O_BomoMG28011_5prime_partial:A_BomoMG_comp129981_c0_seq1 643bp	Bomo_Chr1	PREDICTED:_aarF_domain-containing_protein_kinase_4_[Bombyx_mori]	GO:0004674 F protein serine/threonine kinase activity GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006468 P protein phosphorylation GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0031966 C mitochondrial membrane GO:0032836 P glomerular basement membrane development GO:0072015 P glomerular visceral epithelial cell development
10424	O_BomoMG28012_complete:A_BomoMG_comp130174_c0_seq1 141bp	Bomo_Chr16	PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_31_isoform_X2_[Amyelois_transitella]	GO:0001104 F transcription coregulator activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0016592 C mediator complex
10425	O_BomoMG28013_3prime_partial:A_BomoMG_comp130253_c0_seq1 167bp	Bomo_Chr24	DNA_polymerase_III_subunit_alpha_[Clostridium_senegalense]
10426	O_BomoMG28014_5prime_partial:A_BomoMG_comp130260_c0_seq1 395bp	Bomo_Chr4	PREDICTED:_dedicator_of_cytokinesis_protein_7_[Bombyx_mori]	GO:0000226 P microtubule cytoskeleton organization GO:0005085 F guanyl-nucleotide exchange factor activity GO:0005622 C intracellular anatomical structure GO:0005925 C focal adhesion GO:0007264 P small GTPase mediated signal transduction GO:0007275 P multicellular organism development GO:0007399 P nervous system development GO:0007409 P axonogenesis GO:0008180 C COP9 signalosome GO:0022027 P interkinetic nuclear migration GO:0030154 P cell differentiation GO:0030424 C axon GO:0030426 C growth cone GO:0031175 P neuron projection development GO:0033138 P positive regulation of peptidyl-serine phosphorylation GO:0042995 C cell projection GO:0043005 C neuron projection GO:0045178 C basal part of cell GO:0045200 P establishment of neuroblast polarity GO:0048365 F small GTPase binding GO:0050767 P regulation of neurogenesis GO:0090630 P activation of GTPase activity GO:1904754 P positive regulation of vascular associated smooth muscle cell migration
10427	O_BomoMG28016_5prime_partial:A_BomoMG_comp130461_c0_seq1 197bp	Bomo_Chr16	cuticular_protein_RR-1_motif_56_precursor_[Bombyx_mori]	GO:0008061 F chitin binding GO:0042302 F structural constituent of cuticle
10428	O_BomoMG28017_complete:A_BomoMG_comp130493_c0_seq1 392bp	Bomo_Chr23	PREDICTED:_serum_response_factor_homolog_isoform_X2_[Amyelois_transitella]	GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific GO:0002168 P instar larval development GO:0003677 F DNA binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007275 P multicellular organism development GO:0007424 P open tracheal system development GO:0007430 P terminal branching, open tracheal system GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces GO:0007476 P imaginal disc-derived wing morphogenesis GO:0007614 P short-term memory GO:0008586 P imaginal disc-derived wing vein morphogenesis GO:0030154 P cell differentiation GO:0030431 P sleep GO:0033613 F DNA-binding transcription factor binding GO:0035154 P terminal cell fate specification, open tracheal system GO:0035209 P pupal development GO:0035220 P wing disc development GO:0045165 P cell fate commitment GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046983 F protein dimerization activity
10429	O_BomoMG28019_internal:A_BomoMG_comp130745_c0_seq1 644bp	Bomo_Chr15	PREDICTED:_myotubularin-related_protein_2_[Bombyx_mori]	GO:0002091 P negative regulation of receptor internalization GO:0004438 F phosphatidylinositol-3-phosphatase activity GO:0004725 F protein tyrosine phosphatase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005768 C endosome GO:0005774 C vacuolar membrane GO:0005829 C cytosol GO:0006470 P protein dephosphorylation GO:0006629 P lipid metabolic process GO:0006661 P phosphatidylinositol biosynthetic process GO:0008021 C synaptic vesicle GO:0008138 F protein tyrosine/serine/threonine phosphatase activity GO:0016020 C membrane GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0016791 F phosphatase activity GO:0030424 C axon GO:0030425 C dendrite GO:0031642 P negative regulation of myelination GO:0031901 C early endosome membrane GO:0032288 P myelin assembly GO:0035335 P peptidyl-tyrosine dephosphorylation GO:0042803 F protein homodimerization activity GO:0043197 C dendritic spine GO:0045806 P negative regulation of endocytosis GO:0046488 P phosphatidylinositol metabolic process GO:0046855 P inositol phosphate dephosphorylation GO:0046856 P phosphatidylinositol dephosphorylation GO:0048666 P neuron development GO:0051262 P protein tetramerization GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity GO:0052866 F phosphatidylinositol phosphate phosphatase activity GO:0070062 C extracellular exosome GO:0090394 P negative regulation of excitatory postsynaptic potential GO:0097060 C synaptic membrane GO:0097062 P dendritic spine maintenance GO:0097481 C postsynaptic density GO:2000643 P positive regulation of early endosome to late endosome transport GO:2000645 P negative regulation of receptor catabolic process
10430	O_BomoMG2801_3prime_partial:A_BomoMG_comp22403_c0_seq1 425bp	Bomo_Chr13	PREDICTED:_proton-coupled_amino_acid_transporter_1-like_[Papilio_polytes]	GO:0003333 P amino acid transmembrane transport GO:0006810 P transport GO:0006865 P amino acid transport GO:0015171 F amino acid transmembrane transporter activity GO:0015180 F L-alanine transmembrane transporter activity GO:0015193 F L-proline transmembrane transporter activity GO:0015196 F L-tryptophan transmembrane transporter activity GO:0015293 F symporter activity GO:0015808 P L-alanine transport GO:0015824 P proline transport GO:0015827 P tryptophan transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0035524 P proline transmembrane transport
10431	O_BomoMG28020_complete:A_BomoMG_comp130874_c0_seq1 218bp	Bomo_Chr16	PREDICTED:_protein_lethal(2)k10201-like_[Plutella_xylostella]	GO:0003677 F DNA binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0046872 F metal ion binding
10432	O_BomoMG28023_3prime_partial:A_BomoMG_comp131236_c0_seq1 233bp	Bomo_Chr23	PREDICTED:_HMG_box-containing_protein_4_[Papilio_xuthus]	GO:0003677 F DNA binding GO:0005634 C nucleus GO:0008333 P endosome to lysosome transport GO:0016055 P Wnt signaling pathway GO:0016589 C NURF complex GO:0030178 P negative regulation of Wnt signaling pathway
10433	O_BomoMG28024_5prime_partial:A_BomoMG_comp131631_c0_seq1 142bp	Bomo_Chr24	PREDICTED:_WD_repeat-containing_protein_74_[Bombyx_mori]
10434	O_BomoMG28026_complete:A_BomoMG_comp131675_c0_seq1 244bp	Bomo_Chr22	hypothetical_protein_RR46_00646_[Papilio_xuthus]
10435	O_BomoMG28027_5prime_partial:A_BomoMG_comp131796_c0_seq1 188bp	Bomo_Chr4	PREDICTED:_enhancer_of_mRNA-decapping_protein_4-like,_partial_[Bombyx_mori]	GO:0000932 C P-body GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0008150 P biological_process GO:0016020 C membrane GO:0043231 C intracellular membrane-bounded organelle GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
10436	O_BomoMG28029_complete:A_BomoMG_comp132535_c0_seq1 590bp	Bomo_Chr15	PREDICTED:_alpha-1,2-mannosyltransferase_ALG9_[Bombyx_mori]	GO:0000026 F alpha-1,2-mannosyltransferase activity GO:0000030 F mannosyltransferase activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006486 P protein glycosylation GO:0006488 P dolichol-linked oligosaccharide biosynthetic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0052918 F dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity GO:0052926 F dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity GO:0097502 P mannosylation
10437	O_BomoMG2802_3prime_partial:A_BomoMG_comp22404_c0_seq1 249bp	Bomo_Chr28	PREDICTED:_exosome_complex_component_RRP41_[Papilio_machaon]	GO:0000175 F 3'-5'-exoribonuclease activity GO:0000176 C nuclear exosome (RNase complex) GO:0000177 C cytoplasmic exosome (RNase complex) GO:0000178 C exosome (RNase complex) GO:0000460 P maturation of 5.8S rRNA GO:0000956 P nuclear-transcribed mRNA catabolic process GO:0003723 F RNA binding GO:0004532 F exoribonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006364 P rRNA processing GO:0016075 P rRNA catabolic process GO:0017091 F mRNA 3'-UTR AU-rich region binding GO:0030307 P positive regulation of cell growth GO:0031125 P rRNA 3'-end processing GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' GO:0034475 P U4 snRNA 3'-end processing GO:0035327 C euchromatin GO:0043488 P regulation of mRNA stability GO:0043928 P exonucleolytic catabolism of deadenylated mRNA GO:0045006 P DNA deamination GO:0051607 P defense response to virus GO:0071028 P nuclear mRNA surveillance GO:0071044 P histone mRNA catabolic process GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
10438	O_BomoMG28032_5prime_partial:A_BomoMG_comp132578_c0_seq1 129bp	Bomo_Chr18	hypothetical_protein_RR46_13726_[Papilio_xuthus]
10439	O_BomoMG28033_5prime_partial:A_BomoMG_comp132809_c0_seq1 104bp	Bomo_Chr23	PREDICTED:_uncharacterized_protein_LOC101736443_[Bombyx_mori]
10440	O_BomoMG28034_complete:A_BomoMG_comp132945_c0_seq1 170bp	Bomo_Chr10	PREDICTED:_APOPT_family_protein_CG14806,_mitochondrial_[Papilio_polytes]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005739 C mitochondrion GO:0008150 P biological_process GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0090200 P positive regulation of release of cytochrome c from mitochondria GO:0097193 P intrinsic apoptotic signaling pathway