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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10381 O_BomoMG2795_5prime_partial:A_BomoMG_comp22377_c0_seq1
414bp
 PREDICTED:_uncharacterized_protein_LOC101746639_[Bombyx_mori]
10382 O_BomoMG27961_complete:A_BomoMG_comp122219_c0_seq1
758bp
 hypothetical_protein_KGM_17528_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10383 O_BomoMG27963_3prime_partial:A_BomoMG_comp122280_c0_seq1
209bp
 PREDICTED:_UPF0428_protein_CXorf56_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
10384 O_BomoMG27964_complete:A_BomoMG_comp122316_c0_seq1
356bp
 Uncharacterized_protein_OBRU01_16214_[Operophtera_brumata]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006726 P eye pigment biosynthetic process
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
10385 O_BomoMG27965_internal:A_BomoMG_comp122361_c0_seq1
141bp
 PREDICTED:_PAX-interacting_protein_1_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
10386 O_BomoMG27966_complete:A_BomoMG_comp122374_c0_seq1
479bp
 orthodenticle_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001745 P compound eye morphogenesis
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007355 P anterior region determination
GO:0007389 P pattern specification process
GO:0007399 P nervous system development
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007420 P brain development
GO:0007628 P adult walking behavior
GO:0008056 P ocellus development
GO:0010628 P positive regulation of gene expression
GO:0035284 P brain segmentation
GO:0035288 P anterior head segmentation
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0042463 P ocellus photoreceptor cell development
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045315 P positive regulation of compound eye photoreceptor development
GO:0045871 P obsolete negative regulation of rhodopsin gene expression
GO:0045872 P obsolete positive regulation of rhodopsin gene expression
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046552 P photoreceptor cell fate commitment
GO:0046982 F protein heterodimerization activity
GO:0048816 P ocellus morphogenesis
GO:0061541 P rhabdomere morphogenesis
10387 O_BomoMG27967_internal:A_BomoMG_comp122521_c0_seq1
337bp
 WD_repeat_domain_61_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0055087 C Ski complex
10388 O_BomoMG27968_5prime_partial:A_BomoMG_comp122608_c0_seq1
890bp
 PREDICTED:_beta-mannosidase-like_isoform_X1_[Amyelois_transitella]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004567 F beta-mannosidase activity
GO:0005764 C lysosome
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
10389 O_BomoMG2796_5prime_partial:A_BomoMG_comp22377_c0_seq2
385bp
 PREDICTED:_uncharacterized_protein_LOC101746639_[Bombyx_mori]
10390 O_BomoMG27970_internal:A_BomoMG_comp122647_c0_seq1
373bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
10391 O_BomoMG27971_complete:A_BomoMG_comp122845_c0_seq1
367bp
 PREDICTED:_BRCA1-A_complex_subunit_BRE-like_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010212 P response to ionizing radiation
GO:0016568 P chromatin organization
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0051301 P cell division
GO:0070531 C BRCA1-A complex
GO:0070552 C BRISC complex
10392 O_BomoMG27972_complete:A_BomoMG_comp122865_c0_seq1
237bp
 Nep1_protein_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0009267 P cellular response to starvation
GO:0016740 F transferase activity
GO:0019843 F rRNA binding
GO:0022008 P neurogenesis
GO:0031167 P rRNA methylation
GO:0032040 C small-subunit processome
GO:0032259 P methylation
GO:0040018 P positive regulation of multicellular organism growth
GO:0042254 P ribosome biogenesis
GO:0042742 P defense response to bacterium
GO:0070037 F rRNA (pseudouridine) methyltransferase activity
GO:0070475 P rRNA base methylation
10393 O_BomoMG27973_5prime_partial:A_BomoMG_comp124205_c0_seq1
202bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_integrator_complex_subunit_12_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
10394 O_BomoMG27974_complete:A_BomoMG_comp124334_c0_seq1
168bp
 6-pyruvoyltetrahydropterin_synthase_[Bombyx_mori]
GO:0003874 F 6-pyruvoyltetrahydropterin synthase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006520 P cellular amino acid metabolic process
GO:0006729 P tetrahydrobiopterin biosynthetic process
GO:0007417 P central nervous system development
GO:0016829 F lyase activity
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0050999 P regulation of nitric-oxide synthase activity
10395 O_BomoMG27975_complete:A_BomoMG_comp124375_c0_seq1
412bp
 TAR_DNA-binding_protein_43_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
10396 O_BomoMG27976_complete:A_BomoMG_comp124593_c0_seq1
483bp
 PREDICTED:_DNA-binding_protein_D-ETS-4_isoform_X2_[Amyelois_transitella]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008354 P germ cell migration
GO:0030154 P cell differentiation
GO:0043565 F sequence-specific DNA binding
10397 O_BomoMG27978_3prime_partial:A_BomoMG_comp124653_c0_seq1
205bp
 PREDICTED:_mitoferrin-1-like_[Plutella_xylostella]
GO:0003735 F structural constituent of ribosome
GO:0005381 F iron ion transmembrane transporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006839 P mitochondrial transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0031966 C mitochondrial membrane
GO:0034755 P iron ion transmembrane transport
GO:0048250 P iron import into the mitochondrion
GO:0048515 P spermatid differentiation
GO:0055072 P iron ion homeostasis
GO:0055085 P transmembrane transport
GO:0060586 P multicellular organismal iron ion homeostasis
10398 O_BomoMG27981_3prime_partial:A_BomoMG_comp124826_c0_seq1
136bp
 PREDICTED:_E3_ubiquitin-protein_ligase_listerin_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:1990116 P ribosome-associated ubiquitin-dependent protein catabolic process
10399 O_BomoMG27983_5prime_partial:A_BomoMG_comp124911_c0_seq1
470bp
 PREDICTED:_vacuolar_fusion_protein_CCZ1_homolog_[Papilio_polytes]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0031988 C vesicle
GO:0043231 C intracellular membrane-bounded organelle
10400 O_BomoMG27984_3prime_partial:A_BomoMG_comp124918_c0_seq1
574bp
 PREDICTED:_exocyst_complex_component_4_[Bombyx_mori]
GO:0000145 C exocyst
GO:0000916 P actomyosin contractile ring contraction
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007009 P plasma membrane organization
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007269 P neurotransmitter secretion
GO:0007286 P spermatid development
GO:0007298 P border follicle cell migration
GO:0009925 C basal plasma membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0016324 C apical plasma membrane
GO:0050803 P regulation of synapse structure or activity
GO:0090522 P vesicle tethering involved in exocytosis
GO:0098793 C presynapse
10401 O_BomoMG27986_5prime_partial:A_BomoMG_comp124995_c0_seq1
122bp
 PREDICTED:_endoplasmic_reticulum_metallopeptidase_1-like,_partial_[Bombyx_mori]
10402 O_BomoMG27987_complete:A_BomoMG_comp125422_c0_seq1
208bp
 ras-related_protein_Rab7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000331 C contractile vacuole
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005773 C vacuole
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0006895 P Golgi to endosome transport
GO:0006913 P nucleocytoplasmic transport
GO:0006970 P response to osmotic stress
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031164 C contractile vacuolar membrane
GO:0032456 P endocytic recycling
GO:0033298 P contractile vacuole organization
GO:0042742 P defense response to bacterium
GO:0044351 P macropinocytosis
GO:0045335 C phagocytic vesicle
GO:0048548 P regulation of pinocytosis
GO:0055037 C recycling endosome
GO:0090382 P phagosome maturation
GO:0090387 P phagolysosome assembly involved in apoptotic cell clearance
10403 O_BomoMG27988_5prime_partial:A_BomoMG_comp125795_c0_seq1
238bp
 PREDICTED:_WD_repeat-containing_protein_3-like_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0031965 C nuclear membrane
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
10404 O_BomoMG2798_internal:A_BomoMG_comp22378_c0_seq1
102bp
 chorion_class_A_[Bombyx_mori]
GO:0005213 F structural constituent of egg chorion
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0042600 C egg chorion
10405 O_BomoMG27990_internal:A_BomoMG_comp125924_c0_seq1
291bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
10406 O_BomoMG27992_internal:A_BomoMG_comp126024_c0_seq1
657bp
 PREDICTED:_5'-3'_exoribonuclease_1_isoform_X2_[Bombyx_mori]
GO:0000723 P telomere maintenance
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006396 P RNA processing
GO:0007126 P meiotic cell cycle
GO:0007569 P cell aging
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
10407 O_BomoMG27995_complete:A_BomoMG_comp127222_c0_seq1
379bp
 PREDICTED:_single-stranded_DNA-binding_protein_3_isoform_X1_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006461 P protein-containing complex assembly
GO:0008284 P positive regulation of cell population proliferation
GO:0021501 P prechordal plate formation
GO:0021547 P midbrain-hindbrain boundary initiation
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060322 P head development
GO:0060323 P head morphogenesis
GO:2000744 P positive regulation of anterior head development
10408 O_BomoMG27996_5prime_partial:A_BomoMG_comp127255_c0_seq1
224bp
 PREDICTED:_uncharacterized_protein_LOC105841855_[Bombyx_mori]
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0048812 P neuron projection morphogenesis
GO:0051028 P mRNA transport
10409 O_BomoMG27997_complete:A_BomoMG_comp127418_c0_seq1
187bp
 phosphomevalonate_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004631 F phosphomevalonate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0016126 P sterol biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019287 P isopentenyl diphosphate biosynthetic process, mevalonate pathway
10410 O_BomoMG27998_complete:A_BomoMG_comp127582_c0_seq1
484bp
 PREDICTED:_carboxypeptidase_E-like_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030070 P insulin processing
GO:0030141 C secretory granule
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043025 C neuronal cell body
GO:0046872 F metal ion binding
GO:0097060 C synaptic membrane
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