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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10201 O_BomoMG276_3prime_partial:A_BomoMG_comp17591_c0_seq1
197bp
 p53_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000785 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006954 P inflammatory response
GO:0006974 P cellular response to DNA damage stimulus
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007346 P regulation of mitotic cell cycle
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0009791 P post-embryonic development
GO:0010165 P response to X-ray
GO:0010332 P response to gamma radiation
GO:0010468 P regulation of gene expression
GO:0019901 F protein kinase binding
GO:0021766 P hippocampus development
GO:0030054 C cell junction
GO:0030900 P forebrain development
GO:0031571 P mitotic G1 DNA damage checkpoint signaling
GO:0033326 P cerebrospinal fluid secretion
GO:0034644 P cellular response to UV
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042802 F identical protein binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043523 P regulation of neuron apoptotic process
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045793 P positive regulation of cell size
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048546 P digestive tract morphogenesis
GO:0048666 P neuron development
GO:0051262 P protein tetramerization
GO:0060044 P negative regulation of cardiac muscle cell proliferation
GO:0071158 P regulation of cell cycle
GO:1902167 P positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:2001235 P positive regulation of apoptotic signaling pathway
10202 O_BomoMG27701_internal:A_BomoMG_comp81838_c0_seq1
292bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
10203 O_BomoMG27704_complete:A_BomoMG_comp82258_c0_seq1
160bp
GO:0003993 F acid phosphatase activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
10204 O_BomoMG27705_internal:A_BomoMG_comp82399_c0_seq1
109bp
10205 O_BomoMG27706_complete:A_BomoMG_comp82624_c0_seq1
247bp
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0009368 C endopeptidase Clp complex
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0051260 P protein homooligomerization
GO:0051603 P proteolysis involved in cellular protein catabolic process
10206 O_BomoMG27707_complete:A_BomoMG_comp82641_c0_seq1
373bp
GO:0006071 P glycerol metabolic process
GO:0006629 P lipid metabolic process
GO:0008081 F phosphoric diester hydrolase activity
GO:0008889 F glycerophosphodiester phosphodiesterase activity
GO:0016787 F hydrolase activity
10207 O_BomoMG27708_5prime_partial:A_BomoMG_comp82904_c0_seq1
182bp
10208 O_BomoMG27709_complete:A_BomoMG_comp83187_c0_seq1
213bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
10209 O_BomoMG2770_3prime_partial:A_BomoMG_comp22336_c0_seq1
115bp
 PREDICTED:_DAZ-associated_protein_2-like_isoform_X2_[Bombyx_mori]
10210 O_BomoMG27711_complete:A_BomoMG_comp83482_c0_seq1
120bp
GO:0001405 C PAM complex, Tim23 associated import motor
GO:0001671 F ATPase activator activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005744 C TIM23 mitochondrial import inner membrane translocase complex
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022008 P neurogenesis
GO:0030150 P protein import into mitochondrial matrix
GO:0032781 P positive regulation of ATP-dependent activity
10211 O_BomoMG27712_complete:A_BomoMG_comp83482_c0_seq2
120bp
GO:0001405 C PAM complex, Tim23 associated import motor
GO:0001671 F ATPase activator activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005744 C TIM23 mitochondrial import inner membrane translocase complex
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022008 P neurogenesis
GO:0030150 P protein import into mitochondrial matrix
GO:0032781 P positive regulation of ATP-dependent activity
10212 O_BomoMG27713_complete:A_BomoMG_comp83633_c0_seq1
122bp
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0009060 P aerobic respiration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0033617 P mitochondrial cytochrome c oxidase assembly
10213 O_BomoMG27714_complete:A_BomoMG_comp83825_c0_seq1
198bp
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0016853 F isomerase activity
GO:0042277 F peptide binding
10214 O_BomoMG27715_complete:A_BomoMG_comp84135_c0_seq1
121bp
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0015630 C microtubule cytoskeleton
10215 O_BomoMG27717_internal:A_BomoMG_comp84214_c0_seq1
120bp
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0006403 P RNA localization
GO:0007017 P microtubule-based process
GO:0007275 P multicellular organism development
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0007400 P neuroblast fate determination
GO:0007616 P long-term memory
GO:0008017 F microtubule binding
GO:0008104 P protein localization
GO:0008298 P intracellular mRNA localization
GO:0008595 P anterior/posterior axis specification, embryo
GO:0009925 C basal plasma membrane
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016324 C apical plasma membrane
GO:0019094 P pole plasm mRNA localization
GO:0035418 P protein localization to synapse
GO:0045167 P asymmetric protein localization involved in cell fate determination
GO:0045177 C apical part of cell
GO:0045179 C apical cortex
GO:0045180 C basal cortex
GO:0045450 P bicoid mRNA localization
GO:0045451 P pole plasm oskar mRNA localization
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0048477 P oogenesis
GO:0055059 P asymmetric neuroblast division
GO:0060293 C germ plasm
GO:0071212 C subsynaptic reticulum
10216 O_BomoMG27718_complete:A_BomoMG_comp84890_c0_seq1
274bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008180 C COP9 signalosome
GO:0010388 P protein deneddylation
10217 O_BomoMG27719_internal:A_BomoMG_comp84908_c0_seq1
149bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005916 C fascia adherens
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0051015 F actin filament binding
10218 O_BomoMG27720_internal:A_BomoMG_comp85573_c0_seq1
235bp
10219 O_BomoMG27722_complete:A_BomoMG_comp85816_c0_seq1
284bp
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006520 P cellular amino acid metabolic process
GO:0016787 F hydrolase activity
GO:0070062 C extracellular exosome
10220 O_BomoMG27724_5prime_partial:A_BomoMG_comp85917_c0_seq1
104bp
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
10221 O_BomoMG27725_3prime_partial:A_BomoMG_comp87053_c0_seq1
570bp
GO:0000139 C Golgi membrane
GO:0000209 P protein polyubiquitination
GO:0003674 F molecular_function
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005794 C Golgi apparatus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007229 P integrin-mediated signaling pathway
GO:0008150 P biological_process
GO:0016192 P vesicle-mediated transport
GO:0016567 P protein ubiquitination
GO:0017145 P stem cell division
GO:0030030 P cell projection organization
GO:0031208 F POZ domain binding
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032467 P positive regulation of cytokinesis
GO:0040016 P embryonic cleavage
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0048208 P COPII vesicle coating
GO:0061630 F ubiquitin protein ligase activity
10222 O_BomoMG27728_complete:A_BomoMG_comp87209_c0_seq1
215bp
GO:0000165 P MAPK cascade
GO:0000209 P protein polyubiquitination
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005838 C proteasome regulatory particle
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006521 P regulation of cellular amino acid metabolic process
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0032024 P positive regulation of insulin secretion
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0038061 P NIK/NF-kappaB signaling
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043425 F bHLH transcription factor binding
GO:0043488 P regulation of mRNA stability
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046676 P negative regulation of insulin secretion
GO:0050852 P T cell receptor signaling pathway
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0070682 P proteasome regulatory particle assembly
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090263 P positive regulation of canonical Wnt signaling pathway
10223 O_BomoMG27729_5prime_partial:A_BomoMG_comp87341_c0_seq1
133bp
GO:0005515 F protein binding
GO:0008057 P eye pigment granule organization
GO:0019898 C extrinsic component of membrane
GO:0030133 C transport vesicle
GO:0031083 C BLOC-1 complex
GO:0046907 P intracellular transport
10224 O_BomoMG2772_3prime_partial:A_BomoMG_comp22336_c0_seq2
115bp
 PREDICTED:_DAZ-associated_protein_2-like_isoform_X2_[Bombyx_mori]
10225 O_BomoMG27730_3prime_partial:A_BomoMG_comp87673_c0_seq1
430bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
10226 O_BomoMG27733_internal:A_BomoMG_comp88019_c0_seq1
158bp
10227 O_BomoMG27735_complete:A_BomoMG_comp88331_c0_seq1
279bp
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006744 P ubiquinone biosynthetic process
GO:0008289 F lipid binding
10228 O_BomoMG27736_complete:A_BomoMG_comp88646_c0_seq1
351bp
GO:0008361 P regulation of cell size
GO:0046872 F metal ion binding
GO:0050773 P regulation of dendrite development
GO:0051298 P centrosome duplication
10229 O_BomoMG27738_complete:A_BomoMG_comp88666_c0_seq1
115bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0005886 C plasma membrane
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
10230 O_BomoMG27739_complete:A_BomoMG_comp89410_c0_seq1
349bp
GO:0000338 P protein deneddylation
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007314 P oocyte anterior/posterior axis specification
GO:0007409 P axonogenesis
GO:0008180 C COP9 signalosome
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008347 P glial cell migration
GO:0010388 P protein deneddylation
GO:0016787 F hydrolase activity
GO:0019781 F NEDD8 activating enzyme activity
GO:0019784 F NEDD8-specific protease activity
GO:0030154 P cell differentiation
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034399 C nuclear periphery
GO:0035204 P negative regulation of lamellocyte differentiation
GO:0035207 P negative regulation of hemocyte proliferation
GO:0036099 P female germ-line stem cell population maintenance
GO:0045787 P positive regulation of cell cycle
GO:0046872 F metal ion binding
GO:0048140 P male germ-line cyst encapsulation
GO:0048142 P germarium-derived cystoblast division
GO:0048477 P oogenesis
GO:0050821 P protein stabilization
GO:2000600 P positive regulation of cellular protein catabolic process
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