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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10231 O_BomoMG27740_5prime_partial:A_BomoMG_comp89507_c0_seq1
142bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005829 C cytosol
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097526 C spliceosomal tri-snRNP complex
GO:1990726 C Lsm1-7-Pat1 complex
10232 O_BomoMG27741_complete:A_BomoMG_comp89567_c0_seq1
154bp
10233 O_BomoMG27743_5prime_partial:A_BomoMG_comp89569_c0_seq1
144bp
GO:0000224 F peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006516 P glycoprotein catabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
10234 O_BomoMG27744_complete:A_BomoMG_comp89569_c0_seq1
128bp
10235 O_BomoMG27745_complete:A_BomoMG_comp89645_c0_seq1
339bp
10236 O_BomoMG27746_5prime_partial:A_BomoMG_comp89690_c0_seq1
241bp
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
10237 O_BomoMG27748_complete:A_BomoMG_comp90335_c0_seq1
186bp
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016070 P RNA metabolic process
10238 O_BomoMG27749_complete:A_BomoMG_comp90749_c0_seq1
352bp
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0006909 P phagocytosis
GO:0030041 P actin filament polymerization
GO:0045010 P actin nucleation
GO:0046872 F metal ion binding
GO:0051014 P actin filament severing
GO:0051016 P barbed-end actin filament capping
10239 O_BomoMG2774_complete:A_BomoMG_comp22338_c0_seq1
325bp
 epidermal_retinal_dehydrogenase_[Bombyx_mori]
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0043616 P keratinocyte proliferation
GO:0050908 P detection of light stimulus involved in visual perception
GO:0055114 P obsolete oxidation-reduction process
10240 O_BomoMG27750_complete:A_BomoMG_comp90777_c0_seq1
289bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008270 F zinc ion binding
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0046872 F metal ion binding
10241 O_BomoMG27751_complete:A_BomoMG_comp91392_c0_seq1
251bp
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016592 C mediator complex
GO:0051726 P regulation of cell cycle
10242 O_BomoMG27752_complete:A_BomoMG_comp91418_c0_seq1
343bp
GO:0000338 P protein deneddylation
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0008180 C COP9 signalosome
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010388 P protein deneddylation
GO:0019781 F NEDD8 activating enzyme activity
GO:0030154 P cell differentiation
GO:0036099 P female germ-line stem cell population maintenance
GO:0042802 F identical protein binding
GO:0046331 P lateral inhibition
GO:0046983 F protein dimerization activity
GO:0048140 P male germ-line cyst encapsulation
GO:0048477 P oogenesis
GO:0050821 P protein stabilization
10243 O_BomoMG27753_3prime_partial:A_BomoMG_comp91663_c0_seq1
277bp
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0006323 P DNA packaging
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006473 P protein acetylation
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016407 F acetyltransferase activity
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0030099 P myeloid cell differentiation
GO:0043966 P histone H3 acetylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048513 P animal organ development
GO:0070776 C MOZ/MORF histone acetyltransferase complex
GO:0090398 P cellular senescence
GO:1901796 P regulation of signal transduction by p53 class mediator
10244 O_BomoMG27755_5prime_partial:A_BomoMG_comp91837_c0_seq1
105bp
10245 O_BomoMG27756_complete:A_BomoMG_comp92284_c0_seq1
199bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0046872 F metal ion binding
10246 O_BomoMG27757_complete:A_BomoMG_comp92486_c0_seq1
114bp
GO:0003700 F DNA-binding transcription factor activity
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006355 P regulation of transcription, DNA-templated
GO:0006412 P translation
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
10247 O_BomoMG27758_complete:A_BomoMG_comp92520_c0_seq1
150bp
GO:0005739 C mitochondrion
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0022904 P respiratory electron transport chain
GO:0045333 P cellular respiration
GO:0061179 P negative regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0072593 P reactive oxygen species metabolic process
10248 O_BomoMG27759_complete:A_BomoMG_comp93079_c0_seq1
239bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
10249 O_BomoMG2775_complete:A_BomoMG_comp22338_c0_seq2
320bp
 PREDICTED:_epidermal_retinal_dehydrogenase_isoform_X1_[Bombyx_mori]
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0043616 P keratinocyte proliferation
GO:0050908 P detection of light stimulus involved in visual perception
GO:0055114 P obsolete oxidation-reduction process
10250 O_BomoMG27761_5prime_partial:A_BomoMG_comp93255_c0_seq1
421bp
GO:0005929 C cilium
GO:0042995 C cell projection
GO:0046872 F metal ion binding
10251 O_BomoMG27762_5prime_partial:A_BomoMG_comp93255_c0_seq2
421bp
GO:0005929 C cilium
GO:0042995 C cell projection
GO:0046872 F metal ion binding
10252 O_BomoMG27763_complete:A_BomoMG_comp93508_c0_seq1
435bp
GO:0006629 P lipid metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0022416 P chaeta development
GO:0035220 P wing disc development
GO:0052689 F carboxylic ester hydrolase activity
10253 O_BomoMG27765_5prime_partial:A_BomoMG_comp94449_c0_seq1
310bp
GO:0000049 F tRNA binding
GO:0001525 P angiogenesis
GO:0003723 F RNA binding
GO:0005125 F cytokine activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0006412 P translation
GO:0006915 P apoptotic process
GO:0006954 P inflammatory response
GO:0007155 P cell adhesion
GO:0030133 C transport vesicle
GO:0031410 C cytoplasmic vesicle
10254 O_BomoMG27766_internal:A_BomoMG_comp94658_c0_seq1
191bp
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
10255 O_BomoMG27769_complete:A_BomoMG_comp95267_c0_seq1
687bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0022008 P neurogenesis
GO:0030690 C Noc1p-Noc2p complex
GO:0030691 C Noc2p-Noc3p complex
GO:0035067 P negative regulation of histone acetylation
GO:0042273 P ribosomal large subunit biogenesis
GO:0042393 F histone binding
GO:0070491 F DNA-binding transcription factor binding
10256 O_BomoMG2776_internal:A_BomoMG_comp22340_c0_seq1
196bp
 PREDICTED:_nucleolar_MIF4G_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0022008 P neurogenesis
GO:0042274 P ribosomal small subunit biogenesis
10257 O_BomoMG27771_complete:A_BomoMG_comp95363_c0_seq1
128bp
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0007274 P neuromuscular synaptic transmission
GO:0008057 P eye pigment granule organization
GO:0008355 P olfactory learning
GO:0016197 P endosomal transport
GO:0031083 C BLOC-1 complex
GO:0048489 P synaptic vesicle transport
GO:0050808 P synapse organization
10258 O_BomoMG27772_complete:A_BomoMG_comp95395_c0_seq1
549bp
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009966 P regulation of signal transduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031648 P protein destabilization
GO:0043254 P regulation of protein-containing complex assembly
10259 O_BomoMG27773_5prime_partial:A_BomoMG_comp96209_c0_seq1
164bp
10260 O_BomoMG27775_3prime_partial:A_BomoMG_comp96556_c0_seq1
201bp
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0048471 C perinuclear region of cytoplasm
GO:0050821 P protein stabilization
GO:2000495 P regulation of cell proliferation involved in compound eye morphogenesis
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