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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10171 O_BomoMG27653_complete:A_BomoMG_comp73086_c0_seq2
120bp
GO:0000387 P spliceosomal snRNP assembly
GO:0000395 P mRNA 5'-splice site recognition
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
10172 O_BomoMG27655_internal:A_BomoMG_comp73113_c0_seq1
197bp
10173 O_BomoMG27657_complete:A_BomoMG_comp73285_c0_seq1
284bp
GO:0003824 F catalytic activity
GO:0004165 F dodecenoyl-CoA delta-isomerase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0042802 F identical protein binding
GO:0070062 C extracellular exosome
10174 O_BomoMG27659_5prime_partial:A_BomoMG_comp73439_c0_seq1
232bp
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
10175 O_BomoMG27660_complete:A_BomoMG_comp73514_c0_seq1
467bp
GO:0001889 P liver development
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019867 C outer membrane
GO:0042407 P cristae formation
10176 O_BomoMG27662_5prime_partial:A_BomoMG_comp73515_c0_seq1
133bp
GO:0042302 F structural constituent of cuticle
10177 O_BomoMG27664_complete:A_BomoMG_comp73594_c0_seq1
160bp
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005742 C mitochondrial outer membrane translocase complex
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008320 F protein transmembrane transporter activity
GO:0015031 P protein transport
GO:0015266 F protein transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030150 P protein import into mitochondrial matrix
GO:0031307 C integral component of mitochondrial outer membrane
GO:0045040 P protein insertion into mitochondrial outer membrane
10178 O_BomoMG27666_complete:A_BomoMG_comp73731_c0_seq1
280bp
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006166 P purine ribonucleoside salvage
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016763 F pentosyltransferase activity
GO:0017061 F S-methyl-5-thioadenosine phosphorylase activity
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0043101 P purine-containing compound salvage
10179 O_BomoMG27667_complete:A_BomoMG_comp74158_c0_seq1
167bp
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000226 P microtubule cytoskeleton organization
GO:0000335 P negative regulation of transposition, DNA-mediated
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007294 P germarium-derived oocyte fate determination
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007314 P oocyte anterior/posterior axis specification
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0008380 P RNA splicing
GO:0035145 C exon-exon junction complex
GO:0045451 P pole plasm oskar mRNA localization
GO:0046595 P establishment of pole plasm mRNA localization
GO:0051028 P mRNA transport
GO:0071013 C catalytic step 2 spliceosome
10180 O_BomoMG27668_3prime_partial:A_BomoMG_comp75301_c0_seq1
419bp
10181 O_BomoMG2766_complete:A_BomoMG_comp22329_c0_seq1
217bp
 PREDICTED:_uncharacterized_protein_LOC101742185_isoform_X2_[Bombyx_mori]
10182 O_BomoMG27670_internal:A_BomoMG_comp75639_c0_seq1
116bp
GO:0000139 C Golgi membrane
GO:0000165 P MAPK cascade
GO:0003779 F actin binding
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005543 F phospholipid binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007411 P axon guidance
GO:0007416 P synapse assembly
GO:0008021 C synaptic vesicle
GO:0008091 C spectrin
GO:0016192 P vesicle-mediated transport
GO:0016324 C apical plasma membrane
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0021692 P cerebellar Purkinje cell layer morphogenesis
GO:0030054 C cell junction
GO:0030534 P adult behavior
GO:0035264 P multicellular organism growth
GO:0043025 C neuronal cell body
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051693 P actin filament capping
GO:0071361 P cellular response to ethanol
10183 O_BomoMG27672_complete:A_BomoMG_comp75779_c0_seq1
112bp
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0019788 F NEDD8 transferase activity
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0031466 C Cul5-RING ubiquitin ligase complex
GO:0031467 C Cul7-RING ubiquitin ligase complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043224 C nuclear SCF ubiquitin ligase complex
GO:0045116 P protein neddylation
GO:0046872 F metal ion binding
GO:0051775 P response to redox state
GO:0061630 F ubiquitin protein ligase activity
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:0097602 F cullin family protein binding
10184 O_BomoMG27673_3prime_partial:A_BomoMG_comp76117_c0_seq1
165bp
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
10185 O_BomoMG27675_internal:A_BomoMG_comp76719_c0_seq1
154bp
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
10186 O_BomoMG27676_3prime_partial:A_BomoMG_comp77063_c0_seq1
186bp
GO:0046872 F metal ion binding
10187 O_BomoMG2767_complete:A_BomoMG_comp22331_c0_seq1
263bp
 PREDICTED:_proteasome_subunit_beta_type-4_[Amyelois_transitella]
GO:0000502 C proteasome complex
GO:0001530 F lipopolysaccharide binding
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002862 P negative regulation of inflammatory response to antigenic stimulus
GO:0004175 F endopeptidase activity
GO:0004298 F threonine-type endopeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005839 C proteasome core complex
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0070062 C extracellular exosome
10188 O_BomoMG27681_complete:A_BomoMG_comp77419_c0_seq1
109bp
GO:0001128 F obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0005634 C nucleus
GO:0005672 C transcription factor TFIIA complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051123 P RNA polymerase II preinitiation complex assembly
10189 O_BomoMG27684_internal:A_BomoMG_comp77786_c0_seq1
146bp
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
GO:0031648 P protein destabilization
10190 O_BomoMG27685_complete:A_BomoMG_comp77885_c0_seq1
401bp
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004830 F tryptophan-tRNA ligase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006436 P tryptophanyl-tRNA aminoacylation
GO:0008285 P negative regulation of cell population proliferation
GO:0016874 F ligase activity
GO:0045765 P regulation of angiogenesis
GO:0070062 C extracellular exosome
10191 O_BomoMG27686_complete:A_BomoMG_comp77961_c0_seq1
210bp
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006623 P protein targeting to vacuole
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006896 P Golgi to vacuole transport
GO:0006906 P vesicle fusion
GO:0006909 P phagocytosis
GO:0007430 P terminal branching, open tracheal system
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0031902 C late endosome membrane
GO:0042147 P retrograde transport, endosome to Golgi
GO:0048280 P vesicle fusion with Golgi apparatus
GO:0060439 P trachea morphogenesis
10192 O_BomoMG27687_internal:A_BomoMG_comp77994_c0_seq1
181bp
GO:0000001 P mitochondrion inheritance
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0007053 P spindle assembly involved in male meiosis
GO:0007076 P mitotic chromosome condensation
GO:0007140 P male meiotic nuclear division
GO:0035071 P salivary gland cell autophagic cell death
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0048102 P autophagic cell death
GO:0051225 P spindle assembly
GO:0051299 P centrosome separation
GO:0051321 P meiotic cell cycle
10193 O_BomoMG2768_5prime_partial:A_BomoMG_comp22333_c0_seq1
241bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_4_[Papilio_machaon]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0070847 C core mediator complex
10194 O_BomoMG27690_3prime_partial:A_BomoMG_comp78276_c0_seq1
126bp
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0030132 C clathrin coat of coated pit
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0046872 F metal ion binding
10195 O_BomoMG27691_5prime_partial:A_BomoMG_comp78319_c0_seq1
181bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0070181 F small ribosomal subunit rRNA binding
10196 O_BomoMG27692_5prime_partial:A_BomoMG_comp78570_c0_seq1
282bp
10197 O_BomoMG27693_3prime_partial:A_BomoMG_comp79463_c0_seq1
306bp
10198 O_BomoMG27695_5prime_partial:A_BomoMG_comp79463_c0_seq1
266bp
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0014017 P neuroblast fate commitment
GO:0016055 P Wnt signaling pathway
GO:0016568 P chromatin organization
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0035060 C brahma complex
GO:0042058 P regulation of epidermal growth factor receptor signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046530 P photoreceptor cell differentiation
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0090544 C SWI/SNF superfamily-type complex
10199 O_BomoMG27697_internal:A_BomoMG_comp81113_c0_seq1
236bp
10200 O_BomoMG2769_complete:A_BomoMG_comp22335_c0_seq1
261bp
 PREDICTED:_proliferating_cell_nuclear_antigen_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0030337 F DNA polymerase processivity factor activity
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