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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2881 O_BomoFB12594_complete:A_BomoFB_comp10246_c0_seq1
100bp
2882 O_BomoFB12595_5prime_partial:A_BomoFB_comp10246_c0_seq2
904bp
 PREDICTED:_ABC_transporter_F_family_member_4-like_[Bombyx_mori]
2883 O_BomoFB12596_complete:A_BomoFB_comp10246_c0_seq2
158bp
 nodulation_protein_NolG_[Herbaspirillum_sp._CF444]
2884 O_BomoFB12597_complete:A_BomoFB_comp10246_c0_seq2
108bp
2885 O_BomoFB12598_complete:A_BomoFB_comp10246_c0_seq2
100bp
2886 O_BomoFB12599_internal:A_BomoFB_comp10246_c1_seq1
120bp
 endoglucanase_[Butyrivibrio_fibrisolvens]
2887 O_BomoFB1259_complete:A_BomoFB_comp3043_c0_seq1
120bp
 DNA_polymerase_epsilon_subunit_3_[Bombyx_mandarina]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
2888 O_BomoFB125_complete:A_BomoFB_comp328_c0_seq1
129bp
2889 O_BomoFB12600_complete:A_BomoFB_comp10247_c0_seq1
448bp
 beta-tubulin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
2890 O_BomoFB12601_complete:A_BomoFB_comp10247_c0_seq1
220bp
 hypothetical_protein_N326_12461,_partial_[Eurypyga_helias]
2891 O_BomoFB12602_3prime_partial:A_BomoFB_comp10247_c0_seq2
300bp
 beta-tubulin_1_[Nilaparvata_lugens]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
2892 O_BomoFB12603_complete:A_BomoFB_comp10247_c0_seq3
448bp
 beta-tubulin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
2893 O_BomoFB12604_complete:A_BomoFB_comp10247_c0_seq3
169bp
 hypothetical_protein_N302_09666,_partial_[Corvus_brachyrhynchos]
2894 O_BomoFB12605_3prime_partial:A_BomoFB_comp10248_c0_seq1
544bp
 PREDICTED:_cell_division_cycle_5-like_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
2895 O_BomoFB12606_3prime_partial:A_BomoFB_comp10249_c0_seq1
1008bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2896 O_BomoFB12607_5prime_partial:A_BomoFB_comp10249_c0_seq1
189bp
 dna_rna_polymerases_superfamily_protein_[Lasius_niger]
2897 O_BomoFB12608_complete:A_BomoFB_comp10249_c0_seq1
137bp
 abc_transporter_permease_[Lasius_niger]
2898 O_BomoFB12609_3prime_partial:A_BomoFB_comp10249_c0_seq2
344bp
 PREDICTED:_uncharacterized_protein_LOC105842764,_partial_[Bombyx_mori]
2899 O_BomoFB1260_internal:A_BomoFB_comp3044_c0_seq1
332bp
 PREDICTED:_uncharacterized_protein_LOC101742417_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007616 P long-term memory
GO:0007628 P adult walking behavior
GO:0008270 F zinc ion binding
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0016023 C cytoplasmic vesicle
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030509 P BMP signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0040011 P locomotion
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046872 F metal ion binding
GO:0048678 P response to axon injury
GO:0050808 P synapse organization
GO:2000331 P regulation of terminal button organization
2900 O_BomoFB12610_internal:A_BomoFB_comp10249_c0_seq3
282bp
 PREDICTED:_uncharacterized_protein_LOC105842764,_partial_[Bombyx_mori]
2901 O_BomoFB12611_3prime_partial:A_BomoFB_comp10249_c0_seq4
344bp
 PREDICTED:_uncharacterized_protein_LOC105842764,_partial_[Bombyx_mori]
2902 O_BomoFB12612_5prime_partial:A_BomoFB_comp10250_c0_seq1
288bp
 PREDICTED:_uncharacterized_protein_LOC105841321_[Bombyx_mori]
2903 O_BomoFB12613_complete:A_BomoFB_comp10250_c0_seq1
134bp
 endonuclease-reverse_transcriptase_[Danaus_plexippus]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
2904 O_BomoFB12614_complete:A_BomoFB_comp10250_c0_seq1
109bp
 endonuclease-reverse_transcriptase_[Danaus_plexippus]
2905 O_BomoFB12615_complete:A_BomoFB_comp10251_c0_seq1
221bp
 glutathione_S-transferase_delta_3_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0004602 F glutathione peroxidase activity
GO:0005737 C cytoplasm
GO:0006749 P glutathione metabolic process
GO:0009636 P response to toxic substance
GO:0016740 F transferase activity
GO:0016829 F lyase activity
GO:0018833 F DDT-dehydrochlorinase activity
GO:0098869 P cellular oxidant detoxification
2906 O_BomoFB12616_complete:A_BomoFB_comp10252_c0_seq1
1121bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_7-like_isoform_X1_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010216 P maintenance of DNA methylation
GO:0016579 P protein deubiquitination
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0031647 P regulation of protein stability
GO:0036459 F thiol-dependent deubiquitinase
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0051090 P regulation of DNA-binding transcription factor activity
2907 O_BomoFB12617_complete:A_BomoFB_comp10252_c0_seq2
1116bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_7-like_isoform_X5_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010216 P maintenance of DNA methylation
GO:0016579 P protein deubiquitination
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0031647 P regulation of protein stability
GO:0036459 F thiol-dependent deubiquitinase
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0051090 P regulation of DNA-binding transcription factor activity
2908 O_BomoFB12618_complete:A_BomoFB_comp10253_c0_seq1
241bp
 protein_CREG1_precursor_[Papilio_xuthus]
GO:0003714 F transcription corepressor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0040008 P regulation of growth
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:1903507 P negative regulation of nucleic acid-templated transcription
2909 O_BomoFB12619_complete:A_BomoFB_comp10254_c0_seq1
111bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
2910 O_BomoFB1261_internal:A_BomoFB_comp3046_c0_seq1
101bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
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