SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2341 O_BomoFB12107_internal:A_BomoFB_comp10144_c0_seq1
603bp
 hypothetical_protein_RR48_04989_[Papilio_machaon]
2342 O_BomoFB12108_complete:A_BomoFB_comp10145_c0_seq1
552bp
 putative_odorant-degrading_enzyme_[Antheraea_polyphemus]
GO:0004622 F lysophospholipase activity
GO:0004771 F sterol esterase activity
GO:0004806 F triglyceride lipase activity
GO:0004872 F signaling receptor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005791 C rough endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005887 C integral component of plasma membrane
GO:0006629 P lipid metabolic process
GO:0007158 P neuron cell-cell adhesion
GO:0007416 P synapse assembly
GO:0008150 P biological_process
GO:0009986 C cell surface
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0032403 F protein-containing complex binding
GO:0042043 F neurexin family protein binding
GO:0042572 P retinol metabolic process
GO:0042588 C zymogen granule
GO:0043208 F glycosphingolipid binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0045121 C membrane raft
GO:0045202 C synapse
GO:0050253 F retinyl-palmitate esterase activity
GO:0050804 P modulation of chemical synaptic transmission
GO:0052689 F carboxylic ester hydrolase activity
2343 O_BomoFB12109_complete:A_BomoFB_comp10145_c2_seq1
875bp
 PREDICTED:_echinoderm_microtubule-associated_protein-like_2_isoform_X1_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007052 P mitotic spindle organization
GO:0007405 P neuroblast proliferation
GO:0007420 P brain development
GO:0008017 F microtubule binding
GO:0015631 F tubulin binding
GO:0048471 C perinuclear region of cytoplasm
GO:0097431 C mitotic spindle pole
GO:1990023 C mitotic spindle midzone
2344 O_BomoFB1210_internal:A_BomoFB_comp2990_c0_seq1
157bp
 PREDICTED:_probable_RNA_3'-terminal_phosphate_cyclase-like_protein_[Amyelois_transitella]
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003963 F RNA-3'-phosphate cyclase activity
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0009267 P cellular response to starvation
GO:0042254 P ribosome biogenesis
2345 O_BomoFB12110_complete:A_BomoFB_comp10145_c2_seq1
187bp
2346 O_BomoFB12111_complete:A_BomoFB_comp10145_c2_seq1
177bp
2347 O_BomoFB12112_complete:A_BomoFB_comp10145_c2_seq1
150bp
2348 O_BomoFB12113_complete:A_BomoFB_comp10145_c3_seq1
637bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_tyrosine-protein_phosphatase_non-receptor_type_11-like_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000187 P obsolete activation of MAPK activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005158 F insulin receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006470 P protein dephosphorylation
GO:0006629 P lipid metabolic process
GO:0006641 P triglyceride metabolic process
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007229 P integrin-mediated signaling pathway
GO:0007409 P axonogenesis
GO:0007420 P brain development
GO:0007507 P heart development
GO:0009755 P hormone-mediated signaling pathway
GO:0009967 P positive regulation of signal transduction
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019904 F protein domain specific binding
GO:0021697 P cerebellar cortex formation
GO:0030220 P platelet formation
GO:0030971 F receptor tyrosine kinase binding
GO:0031748 F D1 dopamine receptor binding
GO:0032528 P microvillus organization
GO:0033277 P abortive mitotic cell cycle
GO:0033628 P regulation of cell adhesion mediated by integrin
GO:0033629 P negative regulation of cell adhesion mediated by integrin
GO:0035264 P multicellular organism growth
GO:0035265 P organ growth
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0035855 P megakaryocyte development
GO:0036302 P atrioventricular canal development
GO:0038127 P ERBB signaling pathway
GO:0040014 P regulation of multicellular organism growth
GO:0042445 P hormone metabolic process
GO:0042593 P glucose homeostasis
GO:0043234 C protein-containing complex
GO:0043254 P regulation of protein-containing complex assembly
GO:0043274 F phospholipase binding
GO:0043560 F insulin receptor substrate binding
GO:0045931 P positive regulation of mitotic cell cycle
GO:0046676 P negative regulation of insulin secretion
GO:0046825 P regulation of protein export from nucleus
GO:0046887 P positive regulation of hormone secretion
GO:0046888 P negative regulation of hormone secretion
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048011 P neurotrophin TRK receptor signaling pathway
GO:0048013 P ephrin receptor signaling pathway
GO:0048609 P multicellular organismal reproductive process
GO:0048806 P genitalia development
GO:0048839 P inner ear development
GO:0048873 P homeostasis of number of cells within a tissue
GO:0051428 F peptide hormone receptor binding
GO:0051463 P negative regulation of cortisol secretion
GO:0060020 P Bergmann glial cell differentiation
GO:0060125 P negative regulation of growth hormone secretion
GO:0060325 P face morphogenesis
GO:0061582 P intestinal epithelial cell migration
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:2001275 P obsolete positive regulation of glucose import in response to insulin stimulus
2349 O_BomoFB12114_complete:A_BomoFB_comp10145_c3_seq1
118bp
 Beta-glucosidase_A_[Streptomyces_sp._AVP053U2]
2350 O_BomoFB12115_complete:A_BomoFB_comp10146_c0_seq1
216bp
 hypothetical_protein_KGM_01834_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005875 C microtubule associated complex
GO:0008150 P biological_process
GO:0012505 C endomembrane system
2351 O_BomoFB12116_complete:A_BomoFB_comp10147_c0_seq1
1645bp
 PREDICTED:_death-inducer_obliterator_1_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0097190 P apoptotic signaling pathway
2352 O_BomoFB12117_complete:A_BomoFB_comp10147_c0_seq1
104bp
2353 O_BomoFB12118_complete:A_BomoFB_comp10147_c0_seq2
1805bp
 PREDICTED:_death-inducer_obliterator_1_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0097190 P apoptotic signaling pathway
2354 O_BomoFB12119_complete:A_BomoFB_comp10147_c0_seq2
104bp
2355 O_BomoFB1211_internal:A_BomoFB_comp2991_c0_seq1
1630bp
 PREDICTED:_dmX-like_protein_2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0008021 C synaptic vesicle
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
2356 O_BomoFB12120_internal:A_BomoFB_comp10148_c0_seq1
159bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0005198 F structural molecule activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0008289 F lipid binding
GO:0015074 P DNA integration
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0020002 C host cell plasma membrane
GO:0030430 C host cell cytoplasm
GO:0033644 C host cell membrane
GO:0039526 P modulation by virus of host apoptotic process
GO:0039651 P induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process
GO:0039657 P suppression by virus of host gene expression
GO:0042025 C host cell nucleus
GO:0044174 C host cell endosome
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0055036 C virion membrane
GO:0071897 P DNA biosynthetic process
GO:0072494 C host multivesicular body
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
2357 O_BomoFB12121_complete:A_BomoFB_comp10148_c1_seq1
712bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X3_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2358 O_BomoFB12122_5prime_partial:A_BomoFB_comp10148_c1_seq1
130bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2359 O_BomoFB12123_3prime_partial:A_BomoFB_comp10148_c1_seq1
117bp
 PREDICTED:_uncharacterized_protein_LOC105842278,_partial_[Bombyx_mori]
2360 O_BomoFB12124_3prime_partial:A_BomoFB_comp10148_c1_seq2
815bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X2_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2361 O_BomoFB12125_5prime_partial:A_BomoFB_comp10148_c1_seq2
130bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2362 O_BomoFB12126_internal:A_BomoFB_comp10148_c1_seq3
286bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2363 O_BomoFB12127_complete:A_BomoFB_comp10151_c0_seq1
202bp
 PREDICTED:_ras-related_protein_Rab-35_[Papilio_polytes]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008104 P protein localization
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0019003 F GDP binding
GO:0019882 P antigen processing and presentation
GO:0030136 C clathrin-coated vesicle
GO:0031175 P neuron projection development
GO:0031253 C cell projection membrane
GO:0031410 C cytoplasmic vesicle
GO:0032456 P endocytic recycling
GO:0036010 P protein localization to endosome
GO:0042470 C melanosome
GO:0045171 C intercellular bridge
GO:0045334 C clathrin-coated endocytic vesicle
GO:0048227 P plasma membrane to endosome transport
GO:0070062 C extracellular exosome
GO:1990090 P cellular response to nerve growth factor stimulus
2364 O_BomoFB12128_5prime_partial:A_BomoFB_comp10152_c0_seq1
101bp
 Tyrosine-protein_phosphatase_non-receptor_type_6_[Papilio_machaon]
2365 O_BomoFB12129_5prime_partial:A_BomoFB_comp10152_c0_seq2
101bp
 Tyrosine-protein_phosphatase_non-receptor_type_6_[Papilio_machaon]
2366 O_BomoFB1212_complete:A_BomoFB_comp2991_c0_seq1
210bp
 cyclic_beta_1-2_glucan_synthetase_[Nitrosospira_multiformis]
2367 O_BomoFB12130_complete:A_BomoFB_comp10154_c0_seq1
217bp
 glutathione_S-transferase_delta_2_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
2368 O_BomoFB12131_3prime_partial:A_BomoFB_comp10156_c0_seq1
414bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2369 O_BomoFB12132_internal:A_BomoFB_comp10156_c0_seq2
146bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2370 O_BomoFB12133_internal:A_BomoFB_comp10156_c0_seq3
499bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
previous next from show/25536

- SilkBase 1999-2023 -