Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
2311	O_BomoFB12080_complete:A_BomoFB_comp10135_c0_seq3 108bp	Bomo_Chr15
2312	O_BomoFB12081_5prime_partial:A_BomoFB_comp10136_c0_seq1 177bp	Bomo_Chr6	cleavage_stimulation_factor_64-kDa_subunit_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex GO:0006397 P mRNA processing GO:0031124 P mRNA 3'-end processing GO:0044822 F RNA binding GO:0098789 P pre-mRNA cleavage required for polyadenylation
2313	O_BomoFB12082_complete:A_BomoFB_comp10136_c0_seq1 111bp	Bomo_Chr6	hypothetical_protein_Ccrd_006913,_partial_[Cynara_cardunculus_var._scolymus]
2314	O_BomoFB12083_complete:A_BomoFB_comp10136_c0_seq2 393bp	Bomo_Chr6	cleavage_stimulation_factor_64-kDa_subunit_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005634 C nucleus GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex GO:0006378 P mRNA polyadenylation GO:0006397 P mRNA processing GO:0031124 P mRNA 3'-end processing GO:0071920 C cleavage body GO:0098789 P pre-mRNA cleavage required for polyadenylation
2315	O_BomoFB12084_complete:A_BomoFB_comp10136_c0_seq2 111bp	Bomo_Chr6	hypothetical_protein_Ccrd_006913,_partial_[Cynara_cardunculus_var._scolymus]
2316	O_BomoFB12085_5prime_partial:A_BomoFB_comp10137_c0_seq1 840bp	Bomo_Scaf018	PREDICTED:_uncharacterized_protein_LOC105386827_[Plutella_xylostella]
2317	O_BomoFB12086_complete:A_BomoFB_comp10137_c0_seq1 129bp	Bomo_Scaf018	hypothetical_protein_T10_4778_[Trichinella_papuae]
2318	O_BomoFB12087_complete:A_BomoFB_comp10138_c0_seq1 190bp	Bomo_Scaf079	unknown_[Picea_sitchensis]
2319	O_BomoFB12088_complete:A_BomoFB_comp10141_c0_seq1 247bp	Bomo_Chr26	PREDICTED:_uncharacterized_protein_LOC101741249_isoform_X1_[Bombyx_mori]
2320	O_BomoFB12089_5prime_partial:A_BomoFB_comp10141_c0_seq1 105bp	Bomo_Chr26	PREDICTED:_THAP_domain-containing_protein_5-like_[Plutella_xylostella]
2321	O_BomoFB1208_3prime_partial:A_BomoFB_comp2989_c0_seq1 430bp	Bomo_Chr7	Putative_DNA_helicase_Ino80_[Papilio_xuthus]	GO:0000070 P mitotic sister chromatid segregation GO:0000166 F nucleotide binding GO:0000724 P double-strand break repair via homologous recombination GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003779 F actin binding GO:0004386 F helicase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005874 C microtubule GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006310 P DNA recombination GO:0006338 P chromatin remodeling GO:0006351 P transcription, DNA-templated GO:0006974 P cellular response to DNA damage stimulus GO:0007049 P cell cycle GO:0007067 P mitotic cell cycle GO:0010571 P positive regulation of nuclear cell cycle DNA replication GO:0016787 F hydrolase activity GO:0016887 F ATP hydrolysis activity GO:0030307 P positive regulation of cell growth GO:0031011 C Ino80 complex GO:0032508 P DNA duplex unwinding GO:0034644 P cellular response to UV GO:0043014 F alpha-tubulin binding GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0051225 P spindle assembly GO:0051301 P cell division GO:0070914 P UV-damage excision repair GO:0071479 P cellular response to ionizing radiation GO:2000045 P regulation of G1/S transition of mitotic cell cycle
2322	O_BomoFB12090_5prime_partial:A_BomoFB_comp10142_c0_seq1 256bp	Bomo_Chr1	PREDICTED:_hepatic_leukemia_factor_isoform_X10_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003690 F double-stranded DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007275 P multicellular organism development GO:0035914 P skeletal muscle cell differentiation GO:0043565 F sequence-specific DNA binding GO:0048511 P rhythmic process
2323	O_BomoFB12091_complete:A_BomoFB_comp10142_c0_seq1 188bp	Bomo_Chr1	ArsR_family_transcriptional_regulator_[Nocardioides_sp._UNC345MFTsu5.1]
2324	O_BomoFB12092_complete:A_BomoFB_comp10142_c0_seq2 264bp	Bomo_Chr1	PREDICTED:_hepatic_leukemia_factor_isoform_X7_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003690 F double-stranded DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007275 P multicellular organism development GO:0035914 P skeletal muscle cell differentiation GO:0043565 F sequence-specific DNA binding GO:0048511 P rhythmic process
2325	O_BomoFB12093_complete:A_BomoFB_comp10142_c0_seq2 188bp	Bomo_Chr1	ArsR_family_transcriptional_regulator_[Nocardioides_sp._UNC345MFTsu5.1]
2326	O_BomoFB12094_5prime_partial:A_BomoFB_comp10142_c0_seq3 256bp	Bomo_Chr1	PREDICTED:_hepatic_leukemia_factor_isoform_X10_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003690 F double-stranded DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007275 P multicellular organism development GO:0035914 P skeletal muscle cell differentiation GO:0043565 F sequence-specific DNA binding GO:0048511 P rhythmic process
2327	O_BomoFB12095_complete:A_BomoFB_comp10142_c0_seq3 188bp	Bomo_Chr1	ArsR_family_transcriptional_regulator_[Nocardioides_sp._UNC345MFTsu5.1]
2328	O_BomoFB12096_complete:A_BomoFB_comp10142_c0_seq3 121bp	Bomo_Chr1	hypothetical_protein_[Caulobacter_sp._OV484]
2329	O_BomoFB12097_complete:A_BomoFB_comp10142_c0_seq4 276bp	Bomo_Chr1	PREDICTED:_hepatic_leukemia_factor_isoform_X4_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0035914 P skeletal muscle cell differentiation GO:0043565 F sequence-specific DNA binding GO:0048511 P rhythmic process
2330	O_BomoFB12098_complete:A_BomoFB_comp10142_c0_seq4 188bp	Bomo_Chr1	ArsR_family_transcriptional_regulator_[Nocardioides_sp._UNC345MFTsu5.1]
2331	O_BomoFB12099_complete:A_BomoFB_comp10142_c0_seq5 276bp	Bomo_Chr1	PREDICTED:_hepatic_leukemia_factor_isoform_X4_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0035914 P skeletal muscle cell differentiation GO:0043565 F sequence-specific DNA binding GO:0048511 P rhythmic process
2332	O_BomoFB1209_5prime_partial:A_BomoFB_comp2989_c0_seq1 135bp	Bomo_Chr7
2333	O_BomoFB120_internal:A_BomoFB_comp318_c0_seq2 103bp	Bomo_Chr25	Nuclear_pore_complex_protein_Nup133_[Papilio_xuthus]
2334	O_BomoFB12100_complete:A_BomoFB_comp10142_c0_seq5 188bp	Bomo_Chr1	ArsR_family_transcriptional_regulator_[Nocardioides_sp._UNC345MFTsu5.1]
2335	O_BomoFB12101_complete:A_BomoFB_comp10142_c0_seq5 121bp	Bomo_Chr1	hypothetical_protein_[Caulobacter_sp._OV484]
2336	O_BomoFB12102_complete:A_BomoFB_comp10142_c0_seq6 264bp	Bomo_Chr1	PREDICTED:_hepatic_leukemia_factor_isoform_X7_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003690 F double-stranded DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007275 P multicellular organism development GO:0035914 P skeletal muscle cell differentiation GO:0043565 F sequence-specific DNA binding GO:0048511 P rhythmic process
2337	O_BomoFB12103_complete:A_BomoFB_comp10142_c0_seq6 188bp	Bomo_Chr1	ArsR_family_transcriptional_regulator_[Nocardioides_sp._UNC345MFTsu5.1]
2338	O_BomoFB12104_complete:A_BomoFB_comp10142_c0_seq6 121bp	Bomo_Chr1	hypothetical_protein_[Caulobacter_sp._OV484]
2339	O_BomoFB12105_5prime_partial:A_BomoFB_comp10143_c0_seq1 1269bp	Bomo_Chr5	PREDICTED:_tripeptidyl-peptidase_2_isoform_X2_[Bombyx_mori]	GO:0000209 P protein polyubiquitination GO:0004175 F endopeptidase activity GO:0004177 F aminopeptidase activity GO:0004252 F serine-type endopeptidase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006508 P proteolysis GO:0008233 F peptidase activity GO:0008236 F serine-type peptidase activity GO:0008240 F tripeptidyl-peptidase activity GO:0016787 F hydrolase activity GO:0042277 F peptide binding
2340	O_BomoFB12106_complete:A_BomoFB_comp10143_c0_seq1 166bp	Bomo_Chr5	MULTISPECIES:_restriction_endonuclease_subunit_M_[Acinetobacter]