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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2281 O_BomoFB12053_complete:A_BomoFB_comp10128_c0_seq1
126bp
 transposase_of_ISAar6,_IS256_family_protein,_partial_[Mycobacterium_phlei_RIVM601174]
2282 O_BomoFB12054_5prime_partial:A_BomoFB_comp10129_c0_seq1
262bp
 PREDICTED:_cell_division_cycle_5-like_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
2283 O_BomoFB12055_complete:A_BomoFB_comp10130_c0_seq1
254bp
 Uncharacterized_protein_OBRU01_15802_[Operophtera_brumata]
2284 O_BomoFB12056_internal:A_BomoFB_comp10131_c0_seq1
1506bp
 PREDICTED:_uncharacterized_protein_LOC101745326_isoform_X3_[Bombyx_mori]
2285 O_BomoFB12057_5prime_partial:A_BomoFB_comp10131_c0_seq1
120bp
 hypothetical_protein_[Bacillus_marisflavi]
2286 O_BomoFB12058_complete:A_BomoFB_comp10131_c0_seq1
112bp
2287 O_BomoFB12059_5prime_partial:A_BomoFB_comp10131_c0_seq2
455bp
 PREDICTED:_uncharacterized_protein_LOC101745326_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0010369 C chromocenter
2288 O_BomoFB1205_internal:A_BomoFB_comp2988_c0_seq1
293bp
 PREDICTED:_myotubularin-related_protein_5_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0001691 F pseudophosphatase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0007283 P spermatogenesis
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0019208 F phosphatase regulator activity
GO:0043086 P negative regulation of catalytic activity
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
2289 O_BomoFB12060_internal:A_BomoFB_comp10131_c0_seq3
1264bp
 PREDICTED:_uncharacterized_protein_LOC101745326_isoform_X3_[Bombyx_mori]
2290 O_BomoFB12061_5prime_partial:A_BomoFB_comp10131_c0_seq3
120bp
 hypothetical_protein_[Bacillus_marisflavi]
2291 O_BomoFB12062_complete:A_BomoFB_comp10131_c0_seq3
112bp
2292 O_BomoFB12063_internal:A_BomoFB_comp10133_c0_seq1
946bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008150 P biological_process
2293 O_BomoFB12064_complete:A_BomoFB_comp10133_c0_seq1
172bp
 succinate--CoA_ligase_subunit_alpha_[Desulfobacula_sp._TS]
2294 O_BomoFB12065_5prime_partial:A_BomoFB_comp10133_c0_seq1
146bp
 hypothetical_protein_PLICRDRAFT_106449_[Plicaturopsis_crispa_FD-325_SS-3]
2295 O_BomoFB12066_complete:A_BomoFB_comp10133_c0_seq1
127bp
2296 O_BomoFB12067_complete:A_BomoFB_comp10133_c0_seq1
111bp
 hypothetical_protein_PV04_07750_[Capronia_semiimmersa]
2297 O_BomoFB12068_3prime_partial:A_BomoFB_comp10133_c0_seq2
1311bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008150 P biological_process
2298 O_BomoFB12069_complete:A_BomoFB_comp10133_c0_seq2
172bp
 succinate--CoA_ligase_subunit_alpha_[Desulfobacula_sp._TS]
2299 O_BomoFB1206_5prime_partial:A_BomoFB_comp2988_c0_seq1
138bp
 hypothetical_protein_[Burkholderia_pseudomallei]
2300 O_BomoFB12070_5prime_partial:A_BomoFB_comp10133_c0_seq2
146bp
 hypothetical_protein_PLICRDRAFT_106449_[Plicaturopsis_crispa_FD-325_SS-3]
2301 O_BomoFB12071_complete:A_BomoFB_comp10133_c0_seq2
127bp
2302 O_BomoFB12072_complete:A_BomoFB_comp10133_c0_seq2
111bp
 hypothetical_protein_PV04_07750_[Capronia_semiimmersa]
2303 O_BomoFB12073_complete:A_BomoFB_comp10133_c0_seq2
111bp
 hypothetical_protein_[Streptomyces_sp._NRRL_S-481]
2304 O_BomoFB12074_complete:A_BomoFB_comp10133_c0_seq2
102bp
 coatomer_subunit_gamma_[Kluyveromyces_marxianus]
2305 O_BomoFB12075_complete:A_BomoFB_comp10134_c0_seq1
274bp
 PREDICTED:_toll-interacting_protein-like_[Bombyx_mori]
GO:0002376 P immune system process
GO:0004871 F obsolete signal transducer activity
GO:0005150 F interleukin-1, type I receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006914 P autophagy
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0007267 P cell-cell signaling
GO:0016310 P phosphorylation
GO:0016604 C nuclear body
GO:0019900 F kinase binding
GO:0030855 P epithelial cell differentiation
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032183 F SUMO binding
GO:0033235 P positive regulation of protein sumoylation
GO:0035325 F Toll-like receptor binding
GO:0035556 P intracellular signal transduction
GO:0036010 P protein localization to endosome
GO:0045087 P innate immune response
GO:0045092 C interleukin-18 receptor complex
GO:0045321 P leukocyte activation
GO:0045323 C interleukin-1 receptor complex
GO:0048471 C perinuclear region of cytoplasm
GO:0070062 C extracellular exosome
2306 O_BomoFB12076_complete:A_BomoFB_comp10135_c0_seq1
157bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
2307 O_BomoFB12077_complete:A_BomoFB_comp10135_c0_seq2
179bp
2308 O_BomoFB12078_complete:A_BomoFB_comp10135_c0_seq2
143bp
 RNA-binding_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
2309 O_BomoFB12079_complete:A_BomoFB_comp10135_c0_seq3
157bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
2310 O_BomoFB1207_5prime_partial:A_BomoFB_comp2988_c0_seq1
119bp
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