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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
151 O_BomoFB10136_3prime_partial:A_BomoFB_comp9717_c0_seq1
278bp
 PREDICTED:_probable_aminopeptidase_NPEPL1_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0019538 P protein metabolic process
GO:0030145 F manganese ion binding
GO:0046872 F metal ion binding
152 O_BomoFB10137_5prime_partial:A_BomoFB_comp9717_c0_seq1
164bp
 carbohydrate_kinase_[Thermoanaerobacter_cellulolyticus]
153 O_BomoFB10138_5prime_partial:A_BomoFB_comp9717_c0_seq1
124bp
154 O_BomoFB10139_3prime_partial:A_BomoFB_comp9717_c0_seq2
255bp
 PREDICTED:_probable_aminopeptidase_NPEPL1_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0019538 P protein metabolic process
GO:0030145 F manganese ion binding
GO:0046872 F metal ion binding
155 O_BomoFB1013_complete:A_BomoFB_comp2808_c0_seq1
122bp
156 O_BomoFB10140_5prime_partial:A_BomoFB_comp9717_c0_seq2
164bp
 carbohydrate_kinase_[Thermoanaerobacter_cellulolyticus]
157 O_BomoFB10141_5prime_partial:A_BomoFB_comp9717_c0_seq2
124bp
158 O_BomoFB10142_5prime_partial:A_BomoFB_comp9719_c0_seq1
301bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
159 O_BomoFB10143_5prime_partial:A_BomoFB_comp9719_c0_seq1
159bp
160 O_BomoFB10144_5prime_partial:A_BomoFB_comp9719_c0_seq2
293bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
161 O_BomoFB10145_5prime_partial:A_BomoFB_comp9719_c0_seq2
159bp
162 O_BomoFB10146_5prime_partial:A_BomoFB_comp9719_c0_seq3
301bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
163 O_BomoFB10147_5prime_partial:A_BomoFB_comp9719_c0_seq3
159bp
164 O_BomoFB10148_5prime_partial:A_BomoFB_comp9719_c0_seq4
310bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
165 O_BomoFB10149_5prime_partial:A_BomoFB_comp9719_c0_seq4
159bp
166 O_BomoFB1014_complete:A_BomoFB_comp2808_c0_seq2
640bp
 PREDICTED:_rho_guanine_nucleotide_exchange_factor_7_isoform_X1_[Papilio_polytes]
GO:0000322 C storage vacuole
GO:0001726 C ruffle
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0007030 P Golgi organization
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0010763 P positive regulation of fibroblast migration
GO:0019901 F protein kinase binding
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0030054 C cell junction
GO:0032092 P positive regulation of protein binding
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043065 P positive regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0048013 P ephrin receptor signaling pathway
GO:0048041 P focal adhesion assembly
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0060124 P positive regulation of growth hormone secretion
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1904424 P regulation of GTP binding
GO:2000394 P positive regulation of lamellipodium morphogenesis
167 O_BomoFB10150_5prime_partial:A_BomoFB_comp9719_c0_seq5
310bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
168 O_BomoFB10151_5prime_partial:A_BomoFB_comp9719_c0_seq5
159bp
169 O_BomoFB10152_5prime_partial:A_BomoFB_comp9719_c0_seq6
302bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
170 O_BomoFB10153_5prime_partial:A_BomoFB_comp9719_c0_seq6
159bp
171 O_BomoFB10154_5prime_partial:A_BomoFB_comp9719_c0_seq7
1014bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
172 O_BomoFB10155_complete:A_BomoFB_comp9719_c0_seq7
134bp
 TetR_family_transcriptional_regulator_[Gordonia_terrae]
173 O_BomoFB10156_5prime_partial:A_BomoFB_comp9719_c0_seq7
114bp
 PREDICTED:_tectonin_beta-propeller_repeat-containing_protein_[Halyomorpha_halys]
174 O_BomoFB10157_complete:A_BomoFB_comp9719_c0_seq7
110bp
 conserved_hypothetical_protein_[Aspergillus_terreus_NIH2624]
175 O_BomoFB10158_3prime_partial:A_BomoFB_comp9720_c0_seq1
272bp
 PREDICTED:_uncharacterized_protein_LOC106117266_isoform_X3_[Papilio_xuthus]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0046872 F metal ion binding
176 O_BomoFB10159_internal:A_BomoFB_comp9720_c0_seq2
285bp
 PREDICTED:_uncharacterized_protein_DDB_G0284459-like_isoform_X1_[Bombyx_mori]
177 O_BomoFB1015_internal:A_BomoFB_comp2809_c0_seq1
722bp
 PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
178 O_BomoFB10160_3prime_partial:A_BomoFB_comp9720_c0_seq3
264bp
 PREDICTED:_uncharacterized_protein_LOC106117266_isoform_X3_[Papilio_xuthus]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0046872 F metal ion binding
179 O_BomoFB10161_internal:A_BomoFB_comp9720_c0_seq4
277bp
 PREDICTED:_uncharacterized_protein_DDB_G0284459-like_isoform_X2_[Bombyx_mori]
180 O_BomoFB10162_3prime_partial:A_BomoFB_comp9720_c0_seq5
356bp
 PREDICTED:_uncharacterized_protein_LOC106712434_isoform_X1_[Papilio_machaon]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0046872 F metal ion binding
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