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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1381 O_BomoFB11243_complete:A_BomoFB_comp9994_c1_seq5
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1382 O_BomoFB11244_complete:A_BomoFB_comp9994_c1_seq5
145bp
1383 O_BomoFB11245_complete:A_BomoFB_comp9994_c1_seq5
104bp
 hypothetical_protein_T11_491_[Trichinella_zimbabwensis]
1384 O_BomoFB11246_5prime_partial:A_BomoFB_comp9994_c1_seq6
131bp
 Transcription_factor_SOX-2,_partial_[Caprimulgus_carolinensis]
1385 O_BomoFB11247_5prime_partial:A_BomoFB_comp9994_c1_seq6
126bp
1386 O_BomoFB11248_complete:A_BomoFB_comp9994_c1_seq8
247bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1387 O_BomoFB11249_complete:A_BomoFB_comp9994_c1_seq8
186bp
 hypothetical_protein_[Dyella_japonica]
1388 O_BomoFB1124_3prime_partial:A_BomoFB_comp2917_c0_seq1
562bp
 PREDICTED:_protein_Smaug_[Amyelois_transitella]
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030371 F translation repressor activity
1389 O_BomoFB11250_complete:A_BomoFB_comp9994_c1_seq8
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1390 O_BomoFB11251_complete:A_BomoFB_comp9994_c1_seq8
145bp
1391 O_BomoFB11252_complete:A_BomoFB_comp9994_c1_seq8
136bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1392 O_BomoFB11253_complete:A_BomoFB_comp9994_c1_seq8
116bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X4_[Bombyx_mori]
1393 O_BomoFB11254_complete:A_BomoFB_comp9994_c1_seq9
364bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1394 O_BomoFB11255_complete:A_BomoFB_comp9994_c1_seq9
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1395 O_BomoFB11256_complete:A_BomoFB_comp9994_c1_seq9
145bp
1396 O_BomoFB11257_3prime_partial:A_BomoFB_comp9994_c1_seq10
147bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1397 O_BomoFB11258_5prime_partial:A_BomoFB_comp9994_c1_seq10
125bp
1398 O_BomoFB11259_5prime_partial:A_BomoFB_comp9994_c1_seq10
102bp
1399 O_BomoFB1125_complete:A_BomoFB_comp2917_c0_seq1
115bp
 chromosomal_replication_initiation_protein_DnaA_[Brevundimonas_sp._DS20]
1400 O_BomoFB11260_complete:A_BomoFB_comp9994_c1_seq11
370bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1401 O_BomoFB11261_complete:A_BomoFB_comp9994_c1_seq11
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1402 O_BomoFB11262_complete:A_BomoFB_comp9994_c1_seq11
145bp
1403 O_BomoFB11263_complete:A_BomoFB_comp9994_c1_seq12
166bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1404 O_BomoFB11264_5prime_partial:A_BomoFB_comp9994_c1_seq12
131bp
 Transcription_factor_SOX-2,_partial_[Caprimulgus_carolinensis]
1405 O_BomoFB11265_5prime_partial:A_BomoFB_comp9994_c1_seq12
126bp
1406 O_BomoFB11266_internal:A_BomoFB_comp9994_c1_seq13
173bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1407 O_BomoFB11267_5prime_partial:A_BomoFB_comp9994_c1_seq13
125bp
1408 O_BomoFB11268_5prime_partial:A_BomoFB_comp9994_c1_seq13
102bp
1409 O_BomoFB11269_3prime_partial:A_BomoFB_comp9994_c1_seq14
210bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1410 O_BomoFB1126_5prime_partial:A_BomoFB_comp2918_c0_seq1
120bp
 PREDICTED:_peroxisome_biogenesis_factor_2_[Bombyx_mori]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0007031 P peroxisome organization
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0016593 C Cdc73/Paf1 complex
GO:0031648 P protein destabilization
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
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