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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1351 O_BomoFB11216_complete:A_BomoFB_comp9990_c0_seq4
650bp
 putative_fatty_acid_transport_protein_FATP2_[Spodoptera_litura]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000166 F nucleotide binding
GO:0001579 P medium-chain fatty acid transport
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005902 C microvillus
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0015245 F fatty acid transmembrane transporter activity
GO:0015908 P fatty acid transport
GO:0015909 P long-chain fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0031526 C brush border membrane
GO:0031957 F very long-chain fatty acid-CoA ligase activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0043588 P skin development
GO:0044539 P long-chain fatty acid import into cell
1352 O_BomoFB11217_complete:A_BomoFB_comp9990_c0_seq5
699bp
 fatty_acid_transport_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0015908 P fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0031957 F very long-chain fatty acid-CoA ligase activity
1353 O_BomoFB11218_complete:A_BomoFB_comp9990_c0_seq6
651bp
 putative_fatty_acid_transport_protein_FATP2_[Spodoptera_litura]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000166 F nucleotide binding
GO:0001579 P medium-chain fatty acid transport
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005902 C microvillus
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0015245 F fatty acid transmembrane transporter activity
GO:0015908 P fatty acid transport
GO:0015909 P long-chain fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0031526 C brush border membrane
GO:0031957 F very long-chain fatty acid-CoA ligase activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0043588 P skin development
GO:0044539 P long-chain fatty acid import into cell
1354 O_BomoFB11219_5prime_partial:A_BomoFB_comp9992_c0_seq1
587bp
 PREDICTED:_apoptosis_inhibitor_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006915 P apoptotic process
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0043066 P negative regulation of apoptotic process
1355 O_BomoFB1121_complete:A_BomoFB_comp2910_c0_seq1
120bp
 PREDICTED:_complex_III_assembly_factor_LYRM7_[Papilio_machaon]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
1356 O_BomoFB11220_complete:A_BomoFB_comp9993_c1_seq1
149bp
 hypothetical_protein_AUEXF2481DRAFT_111275_[Aureobasidium_subglaciale_EXF-2481]
1357 O_BomoFB11221_complete:A_BomoFB_comp9993_c1_seq2
131bp
 hypothetical_protein_AUEXF2481DRAFT_111275_[Aureobasidium_subglaciale_EXF-2481]
1358 O_BomoFB11222_3prime_partial:A_BomoFB_comp9994_c0_seq1
166bp
 PREDICTED:_uncharacterized_protein_LOC101745679_[Bombyx_mori]
1359 O_BomoFB11223_complete:A_BomoFB_comp9994_c0_seq1
130bp
 PREDICTED:_YLP_motif-containing_protein_1_isoform_X1_[Python_bivittatus]
1360 O_BomoFB11224_complete:A_BomoFB_comp9994_c1_seq1
301bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1361 O_BomoFB11225_complete:A_BomoFB_comp9994_c1_seq1
172bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1362 O_BomoFB11226_complete:A_BomoFB_comp9994_c1_seq1
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1363 O_BomoFB11227_complete:A_BomoFB_comp9994_c1_seq1
145bp
1364 O_BomoFB11228_complete:A_BomoFB_comp9994_c1_seq1
104bp
 hypothetical_protein_T11_491_[Trichinella_zimbabwensis]
1365 O_BomoFB11229_complete:A_BomoFB_comp9994_c1_seq2
247bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1366 O_BomoFB1122_internal:A_BomoFB_comp2914_c0_seq1
187bp
 PREDICTED:_coiled-coil_domain-containing_protein_86_[Amyelois_transitella]
GO:0005634 C nucleus
1367 O_BomoFB11230_complete:A_BomoFB_comp9994_c1_seq2
166bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1368 O_BomoFB11231_complete:A_BomoFB_comp9994_c1_seq2
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1369 O_BomoFB11232_complete:A_BomoFB_comp9994_c1_seq2
145bp
1370 O_BomoFB11233_complete:A_BomoFB_comp9994_c1_seq2
133bp
 hybrid_sensor_histidine_kinase/response_regulator_[Zooshikella_ganghwensis]
1371 O_BomoFB11234_internal:A_BomoFB_comp9994_c1_seq3
155bp
 Transcription_factor_SOX-2,_partial_[Caprimulgus_carolinensis]
1372 O_BomoFB11235_internal:A_BomoFB_comp9994_c1_seq3
154bp
1373 O_BomoFB11236_complete:A_BomoFB_comp9994_c1_seq4
360bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1374 O_BomoFB11237_complete:A_BomoFB_comp9994_c1_seq4
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1375 O_BomoFB11238_complete:A_BomoFB_comp9994_c1_seq4
145bp
1376 O_BomoFB11239_complete:A_BomoFB_comp9994_c1_seq4
136bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1377 O_BomoFB1123_3prime_partial:A_BomoFB_comp2915_c0_seq2
357bp
 PREDICTED:_lanC-like_protein_2_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0043295 F glutathione binding
GO:0046872 F metal ion binding
GO:0050750 F low-density lipoprotein particle receptor binding
GO:0070062 C extracellular exosome
1378 O_BomoFB11240_complete:A_BomoFB_comp9994_c1_seq4
104bp
 hypothetical_protein_T11_491_[Trichinella_zimbabwensis]
1379 O_BomoFB11241_complete:A_BomoFB_comp9994_c1_seq5
301bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1380 O_BomoFB11242_complete:A_BomoFB_comp9994_c1_seq5
166bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
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