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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1411 O_BomoFB11270_5prime_partial:A_BomoFB_comp9994_c1_seq14
149bp
 hypothetical_protein_BRAFLDRAFT_67390_[Branchiostoma_floridae]
1412 O_BomoFB11271_complete:A_BomoFB_comp9994_c1_seq16
247bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1413 O_BomoFB11272_complete:A_BomoFB_comp9994_c1_seq16
172bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1414 O_BomoFB11273_complete:A_BomoFB_comp9994_c1_seq16
155bp
 hypothetical_protein_[Streptomyces_hygroscopicus]
1415 O_BomoFB11274_complete:A_BomoFB_comp9994_c1_seq16
145bp
1416 O_BomoFB11275_complete:A_BomoFB_comp9994_c1_seq16
133bp
 hybrid_sensor_histidine_kinase/response_regulator_[Zooshikella_ganghwensis]
1417 O_BomoFB11276_3prime_partial:A_BomoFB_comp9994_c1_seq17
216bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1418 O_BomoFB11277_5prime_partial:A_BomoFB_comp9994_c1_seq17
155bp
 hypothetical_protein_BRAFLDRAFT_67390_[Branchiostoma_floridae]
1419 O_BomoFB11278_3prime_partial:A_BomoFB_comp9994_c1_seq18
147bp
 PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1420 O_BomoFB11279_5prime_partial:A_BomoFB_comp9994_c1_seq18
125bp
1421 O_BomoFB1127_3prime_partial:A_BomoFB_comp2918_c1_seq1
168bp
 PREDICTED:_peroxisome_biogenesis_factor_2_[Bombyx_mori]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0007031 P peroxisome organization
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
1422 O_BomoFB11280_5prime_partial:A_BomoFB_comp9994_c1_seq18
102bp
1423 O_BomoFB11281_internal:A_BomoFB_comp9994_c3_seq1
1082bp
 PREDICTED:_uncharacterized_protein_LOC101745679_[Bombyx_mori]
1424 O_BomoFB11282_5prime_partial:A_BomoFB_comp9994_c3_seq1
167bp
 acyl-CoA_synthetase_[Bradyrhizobium_sp._CCBAU_15635]
1425 O_BomoFB11283_complete:A_BomoFB_comp9994_c3_seq1
104bp
 60S_ribosomal_protein_L7a_[Fukomys_damarensis]
1426 O_BomoFB11284_complete:A_BomoFB_comp9995_c0_seq1
862bp
 tudor_staphylococcus/micrococcal_nuclease_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016020 C membrane
GO:0016442 C RISC complex
GO:0031047 P gene silencing by RNA
GO:0042470 C melanosome
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097433 C dense body
1427 O_BomoFB11285_complete:A_BomoFB_comp9995_c0_seq1
117bp
 putative_protein_YEL023C_OS=Saccharomyces_cerevisiae_(strain_ATCC_204508_/_S288c)_GN=YEL023C_PE=4_SV=1_[Rhizoctonia_solani_AG-1_IB]
1428 O_BomoFB11286_complete:A_BomoFB_comp9995_c0_seq2
889bp
 tudor_staphylococcus/micrococcal_nuclease_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016442 C RISC complex
GO:0031047 P gene silencing by RNA
GO:0042470 C melanosome
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1429 O_BomoFB11287_complete:A_BomoFB_comp9995_c0_seq2
117bp
 putative_protein_YEL023C_OS=Saccharomyces_cerevisiae_(strain_ATCC_204508_/_S288c)_GN=YEL023C_PE=4_SV=1_[Rhizoctonia_solani_AG-1_IB]
1430 O_BomoFB11288_3prime_partial:A_BomoFB_comp9996_c0_seq1
416bp
 PREDICTED:_CDK5_regulatory_subunit-associated_protein_3_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0001933 P negative regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0008283 P cell population proliferation
GO:0010921 P regulation of phosphatase activity
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0019901 F protein kinase binding
GO:0030262 P apoptotic nuclear changes
GO:0030332 F cyclin binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031398 P positive regulation of protein ubiquitination
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032403 F protein-containing complex binding
GO:0043234 C protein-containing complex
GO:0043407 P negative regulation of MAP kinase activity
GO:0044387 P negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0044389 F ubiquitin-like protein ligase binding
GO:0044818 P mitotic G2/M transition checkpoint
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051019 F mitogen-activated protein kinase binding
GO:0051059 F NF-kappaB binding
GO:0071569 P protein ufmylation
GO:0071901 P negative regulation of protein serine/threonine kinase activity
GO:0097371 F MDM2/MDM4 family protein binding
GO:1900182 P positive regulation of protein localization to nucleus
GO:1901798 P positive regulation of signal transduction by p53 class mediator
GO:1903363 P negative regulation of cellular protein catabolic process
GO:2000060 P positive regulation of ubiquitin-dependent protein catabolic process
1431 O_BomoFB11289_complete:A_BomoFB_comp9997_c0_seq2
135bp
 PREDICTED:_uncharacterized_protein_LOC106105878_[Papilio_polytes]
1432 O_BomoFB1128_complete:A_BomoFB_comp2919_c0_seq1
263bp
 putative_chromobox-like_protein_1_[Danaus_plexippus]
GO:0000775 C chromosome, centromeric region
GO:0000779 C condensed chromosome, centromeric region
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005719 C euchromatin
GO:0005720 C heterochromatin
GO:0005819 C spindle
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0019899 F enzyme binding
GO:0019904 F protein domain specific binding
GO:0031618 C pericentric heterochromatin
GO:0042802 F identical protein binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:1990226 F histone methyltransferase binding
1433 O_BomoFB11290_complete:A_BomoFB_comp9997_c0_seq4
135bp
 PREDICTED:_uncharacterized_protein_LOC106105878_[Papilio_polytes]
1434 O_BomoFB11291_internal:A_BomoFB_comp9998_c0_seq1
149bp
 hypothetical_protein_L798_10655_[Zootermopsis_nevadensis]
1435 O_BomoFB11292_complete:A_BomoFB_comp9999_c0_seq2
324bp
 autophagy_related_protein_Atg3-like_protein_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000153 C cytoplasmic ubiquitin ligase complex
GO:0000422 P autophagy of mitochondrion
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016874 F ligase activity
GO:0019776 F Atg8 ligase activity
GO:0019777 F Atg12 transferase activity
GO:0043653 P mitochondrial fragmentation involved in apoptotic process
GO:0044804 P autophagy of nucleus
1436 O_BomoFB11293_complete:A_BomoFB_comp9999_c0_seq2
123bp
1437 O_BomoFB11294_5prime_partial:A_BomoFB_comp10000_c0_seq1
495bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
1438 O_BomoFB11295_complete:A_BomoFB_comp10000_c0_seq1
201bp
 Nuclear_envelope_morphology_protein_1_[Ceratocystis_platani]
1439 O_BomoFB11296_complete:A_BomoFB_comp10000_c0_seq1
171bp
 DUF1604_domain_protein_[Ustilaginoidea_virens]
1440 O_BomoFB11297_5prime_partial:A_BomoFB_comp10000_c0_seq1
106bp
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