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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4261 O_BomoEE13836_complete:A_BomoEE_comp67325_c0_seq3
638bp
 Splicing_factor_3A_subunit_1_[Papilio_xuthus]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
4262 O_BomoEE13837_complete:A_BomoEE_comp67325_c0_seq3
356bp
4263 O_BomoEE13838_complete:A_BomoEE_comp67325_c0_seq3
161bp
4264 O_BomoEE13839_complete:A_BomoEE_comp67325_c0_seq3
108bp
4265 O_BomoEE1383_complete:A_BomoEE_comp29892_c0_seq1
196bp
 hypothetical_protein_KGM_17207_[Danaus_plexippus]
GO:0004059 F aralkylamine N-acetyltransferase activity
GO:0004060 F arylamine N-acetyltransferase activity
GO:0005737 C cytoplasm
GO:0006584 P catecholamine metabolic process
GO:0008080 F N-acetyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0030187 P melatonin biosynthetic process
GO:0030431 P sleep
GO:0042420 P dopamine catabolic process
GO:0042429 P serotonin catabolic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0046334 P octopamine catabolic process
GO:0048066 P developmental pigmentation
4266 O_BomoEE13840_complete:A_BomoEE_comp67325_c0_seq4
740bp
 Splicing_factor_3A_subunit_1_[Papilio_xuthus]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
4267 O_BomoEE13841_complete:A_BomoEE_comp67325_c0_seq4
356bp
4268 O_BomoEE13842_complete:A_BomoEE_comp67325_c0_seq4
161bp
4269 O_BomoEE13843_complete:A_BomoEE_comp67325_c0_seq4
108bp
4270 O_BomoEE13844_complete:A_BomoEE_comp67325_c0_seq5
638bp
 Splicing_factor_3A_subunit_1_[Papilio_xuthus]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
4271 O_BomoEE13845_complete:A_BomoEE_comp67325_c0_seq5
356bp
4272 O_BomoEE13846_complete:A_BomoEE_comp67325_c0_seq5
161bp
4273 O_BomoEE13847_complete:A_BomoEE_comp67325_c0_seq5
108bp
4274 O_BomoEE13848_3prime_partial:A_BomoEE_comp67326_c0_seq2
125bp
4275 O_BomoEE13849_5prime_partial:A_BomoEE_comp67335_c0_seq1
111bp
 PREDICTED:_uncharacterized_protein_LOC105383856_isoform_X8_[Plutella_xylostella]
GO:0000209 P protein polyubiquitination
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0030054 C cell junction
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
4276 O_BomoEE1384_complete:A_BomoEE_comp29892_c0_seq1
106bp
4277 O_BomoEE13850_complete:A_BomoEE_comp67341_c0_seq1
461bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_phosphatase_1L_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005622 C intracellular anatomical structure
GO:0005789 C endoplasmic reticulum membrane
GO:0006470 P protein dephosphorylation
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030148 P sphingolipid biosynthetic process
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
4278 O_BomoEE13851_complete:A_BomoEE_comp67341_c0_seq1
110bp
4279 O_BomoEE13852_5prime_partial:A_BomoEE_comp67345_c1_seq1
350bp
 PREDICTED:_solute_carrier_family_22_member_1_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
4280 O_BomoEE13853_5prime_partial:A_BomoEE_comp67345_c1_seq2
350bp
 PREDICTED:_solute_carrier_family_22_member_1_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
4281 O_BomoEE13854_complete:A_BomoEE_comp67345_c1_seq2
103bp
 PREDICTED:_solute_carrier_family_22_member_1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005329 F dopamine:sodium symporter activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015220 F choline transmembrane transporter activity
GO:0015651 F quaternary ammonium group transmembrane transporter activity
GO:0015697 P quaternary ammonium group transport
GO:0015871 P choline transport
GO:0015872 P dopamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0072488 P ammonium transmembrane transport
4282 O_BomoEE13855_5prime_partial:A_BomoEE_comp67345_c1_seq3
113bp
 PREDICTED:_solute_carrier_family_22_member_1_[Bombyx_mori]
4283 O_BomoEE13856_3prime_partial:A_BomoEE_comp67349_c0_seq1
484bp
 ionotropic_GABA-aminobutyric_acid_receptor_GRD_[Bombyx_mori]
GO:0004890 F GABA-A receptor activity
GO:0005216 F ion channel activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007214 P gamma-aminobutyric acid signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:1902476 P chloride transmembrane transport
GO:1902711 C GABA-A receptor complex
4284 O_BomoEE13857_complete:A_BomoEE_comp67349_c0_seq2
182bp
 ionotropic_GABA_receptor_subunit_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0002230 P positive regulation of defense response to virus by host
GO:0004872 F signaling receptor activity
GO:0004890 F GABA-A receptor activity
GO:0005215 F transporter activity
GO:0005216 F ion channel activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007165 P signal transduction
GO:0007214 P gamma-aminobutyric acid signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0007420 P brain development
GO:0007605 P sensory perception of sound
GO:0008306 P associative learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0032809 C neuronal cell body membrane
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0043235 C receptor complex
GO:0043523 P regulation of neuron apoptotic process
GO:0043524 P negative regulation of neuron apoptotic process
GO:0044297 C cell body
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048666 P neuron development
GO:0050811 F GABA receptor binding
GO:0060119 P inner ear receptor cell development
GO:0060384 P innervation
GO:0090102 P cochlea development
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
GO:1902476 P chloride transmembrane transport
GO:1902711 C GABA-A receptor complex
4285 O_BomoEE13858_3prime_partial:A_BomoEE_comp67349_c0_seq3
227bp
 ionotropic_GABA_receptor_subunit_[Bombyx_mori]
GO:0004890 F GABA-A receptor activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005261 F cation channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007165 P signal transduction
GO:0015276 F ligand-gated ion channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016933 F extracellularly glycine-gated ion channel activity
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0098655 P cation transmembrane transport
GO:1902476 P chloride transmembrane transport
4286 O_BomoEE13859_complete:A_BomoEE_comp67349_c0_seq4
595bp
 ionotropic_GABA-aminobutyric_acid_receptor_GRD_[Bombyx_mori]
GO:0004890 F GABA-A receptor activity
GO:0005216 F ion channel activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007214 P gamma-aminobutyric acid signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:1902476 P chloride transmembrane transport
GO:1902711 C GABA-A receptor complex
4287 O_BomoEE1385_complete:A_BomoEE_comp29913_c0_seq1
271bp
 hypothetical_protein_KGM_15908_[Danaus_plexippus]
4288 O_BomoEE13860_complete:A_BomoEE_comp67349_c0_seq6
115bp
 ionotropic_GABA_receptor_subunit_[Bombyx_mori]
GO:0004890 F GABA-A receptor activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005261 F cation channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007165 P signal transduction
GO:0015276 F ligand-gated ion channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016933 F extracellularly glycine-gated ion channel activity
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0098655 P cation transmembrane transport
GO:1902476 P chloride transmembrane transport
4289 O_BomoEE13861_complete:A_BomoEE_comp67349_c0_seq7
338bp
 ionotropic_GABA-aminobutyric_acid_receptor_GRD_[Bombyx_mori]
GO:0004890 F GABA-A receptor activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005261 F cation channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007165 P signal transduction
GO:0015276 F ligand-gated ion channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016933 F extracellularly glycine-gated ion channel activity
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0098655 P cation transmembrane transport
GO:1902476 P chloride transmembrane transport
4290 O_BomoEE13862_complete:A_BomoEE_comp67350_c0_seq3
157bp
 PREDICTED:_thyroid_transcription_factor_1-like_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
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