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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4111 O_BomoEE13700_complete:A_BomoEE_comp67216_c0_seq1
695bp
 PREDICTED:_cyclic_nucleotide-gated_cation_channel_beta-3_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001750 C photoreceptor outer segment
GO:0005216 F ion channel activity
GO:0005221 F intracellular cyclic nucleotide activated cation channel activity
GO:0005222 F intracellular cAMP-activated cation channel activity
GO:0005223 F intracellular cGMP-activated cation channel activity
GO:0005249 F voltage-gated potassium channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0007601 P visual perception
GO:0009187 P cyclic nucleotide metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030553 F cGMP binding
GO:0042391 P regulation of membrane potential
GO:0050896 P response to stimulus
GO:0055085 P transmembrane transport
GO:0071805 P potassium ion transmembrane transport
GO:0098655 P cation transmembrane transport
GO:1902495 C transmembrane transporter complex
4112 O_BomoEE13701_complete:A_BomoEE_comp67216_c0_seq1
151bp
4113 O_BomoEE13702_complete:A_BomoEE_comp67218_c0_seq1
114bp
4114 O_BomoEE13703_complete:A_BomoEE_comp67218_c0_seq2
302bp
 hypothetical_protein_KGM_13813_[Danaus_plexippus]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005687 C U4 snRNP
GO:0005690 C U4atac snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0060041 P retina development in camera-type eye
GO:0071011 C precatalytic spliceosome
GO:0071339 C MLL1 complex
GO:0097526 C spliceosomal tri-snRNP complex
4115 O_BomoEE13704_complete:A_BomoEE_comp67218_c0_seq2
196bp
 PREDICTED:_U4/U6_small_nuclear_ribonucleoprotein_Prp31_[Amyelois_transitella]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005687 C U4 snRNP
GO:0005690 C U4atac snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0060041 P retina development in camera-type eye
GO:0071011 C precatalytic spliceosome
GO:0071339 C MLL1 complex
GO:0097526 C spliceosomal tri-snRNP complex
4116 O_BomoEE13705_complete:A_BomoEE_comp67218_c0_seq3
497bp
 PREDICTED:_U4/U6_small_nuclear_ribonucleoprotein_Prp31_[Amyelois_transitella]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005687 C U4 snRNP
GO:0005690 C U4atac snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0060041 P retina development in camera-type eye
GO:0071011 C precatalytic spliceosome
GO:0071339 C MLL1 complex
GO:0097526 C spliceosomal tri-snRNP complex
4117 O_BomoEE13706_internal:A_BomoEE_comp67220_c0_seq1
187bp
hypothetical_protein_[Bacillus_phage_vB_BanS-Tsamsa]
4118 O_BomoEE13707_complete:A_BomoEE_comp67220_c0_seq1
126bp
4119 O_BomoEE13708_3prime_partial:A_BomoEE_comp67220_c1_seq1
321bp
hypothetical_protein_[Bacillus_phage_vB_BanS-Tsamsa]
4120 O_BomoEE13709_3prime_partial:A_BomoEE_comp67220_c1_seq2
321bp
hypothetical_protein_[Bacillus_phage_vB_BanS-Tsamsa]
4121 O_BomoEE1370_5prime_partial:A_BomoEE_comp29843_c0_seq1
383bp
 PREDICTED:_zinc_finger_protein_568_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4122 O_BomoEE13710_complete:A_BomoEE_comp67225_c0_seq1
526bp
 UDP-glycosyltransferase_UGT46A2_precursor_[Bombyx_mori]
GO:0001972 F retinoic acid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006805 P xenobiotic metabolic process
GO:0008152 P metabolic process
GO:0008202 P steroid metabolic process
GO:0009813 P flavonoid biosynthetic process
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0052695 P cellular glucuronidation
GO:0052696 P flavonoid glucuronidation
4123 O_BomoEE13711_complete:A_BomoEE_comp67225_c0_seq2
471bp
 UDP-glycosyltransferase_UGT46A2_precursor_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
4124 O_BomoEE13712_complete:A_BomoEE_comp67225_c0_seq3
528bp
 UDP-glycosyltransferase_UGT46A1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
GO:0019439 P aromatic compound catabolic process
GO:0031090 C organelle membrane
GO:0042493 P response to xenobiotic stimulus
GO:0043231 C intracellular membrane-bounded organelle
4125 O_BomoEE13713_complete:A_BomoEE_comp67229_c0_seq1
411bp
 PREDICTED:_uncharacterized_protein_LOC106101399_[Papilio_polytes]
4126 O_BomoEE13714_5prime_partial:A_BomoEE_comp67232_c1_seq1
451bp
 PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
4127 O_BomoEE13715_complete:A_BomoEE_comp67232_c1_seq1
316bp
 PREDICTED:_talin-1_[Bombyx_mori]
4128 O_BomoEE13716_complete:A_BomoEE_comp67232_c1_seq1
277bp
4129 O_BomoEE13717_complete:A_BomoEE_comp67232_c1_seq1
102bp
4130 O_BomoEE13718_5prime_partial:A_BomoEE_comp67232_c1_seq2
713bp
 PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
4131 O_BomoEE13719_3prime_partial:A_BomoEE_comp67232_c1_seq2
484bp
4132 O_BomoEE1371_3prime_partial:A_BomoEE_comp29843_c0_seq1
176bp
4133 O_BomoEE13720_complete:A_BomoEE_comp67232_c1_seq2
277bp
4134 O_BomoEE13721_5prime_partial:A_BomoEE_comp67232_c1_seq3
764bp
 PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
4135 O_BomoEE13722_complete:A_BomoEE_comp67232_c1_seq3
277bp
4136 O_BomoEE13723_5prime_partial:A_BomoEE_comp67232_c1_seq4
451bp
 PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
4137 O_BomoEE13724_complete:A_BomoEE_comp67232_c1_seq4
277bp
4138 O_BomoEE13725_5prime_partial:A_BomoEE_comp67234_c0_seq1
407bp
 transcription_factor_Ets_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0030855 P epithelial cell differentiation
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050673 P epithelial cell proliferation
4139 O_BomoEE13726_complete:A_BomoEE_comp67244_c0_seq1
196bp
 PREDICTED:_putative_acyl-activating_enzyme_19_[Plutella_xylostella]
4140 O_BomoEE13727_complete:A_BomoEE_comp67244_c0_seq1
106bp
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