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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11731 O_BomoEE20559_complete:A_BomoEE_comp70026_c1_seq12
159bp
11732 O_BomoEE2055_complete:A_BomoEE_comp33432_c0_seq1
114bp
11733 O_BomoEE20560_complete:A_BomoEE_comp70026_c1_seq12
115bp
11734 O_BomoEE20561_complete:A_BomoEE_comp70026_c1_seq12
107bp
11735 O_BomoEE20562_complete:A_BomoEE_comp70026_c1_seq13
528bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11736 O_BomoEE20563_complete:A_BomoEE_comp70026_c1_seq13
200bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X1_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11737 O_BomoEE20564_complete:A_BomoEE_comp70026_c1_seq13
161bp
11738 O_BomoEE20565_complete:A_BomoEE_comp70026_c1_seq13
115bp
11739 O_BomoEE20566_complete:A_BomoEE_comp70026_c1_seq13
112bp
11740 O_BomoEE20567_complete:A_BomoEE_comp70026_c1_seq14
466bp
 PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11741 O_BomoEE20568_complete:A_BomoEE_comp70026_c1_seq14
386bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X2_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11742 O_BomoEE20569_complete:A_BomoEE_comp70026_c1_seq14
161bp
11743 O_BomoEE2056_complete:A_BomoEE_comp33433_c0_seq1
426bp
 PREDICTED:_ATP-dependent_RNA_helicase_WM6_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005700 C polytene chromosome
GO:0005875 C microtubule associated complex
GO:0006338 P chromatin remodeling
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
11744 O_BomoEE20570_complete:A_BomoEE_comp70026_c1_seq14
115bp
11745 O_BomoEE20571_complete:A_BomoEE_comp70026_c1_seq15
484bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11746 O_BomoEE20572_complete:A_BomoEE_comp70026_c1_seq15
200bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X1_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11747 O_BomoEE20573_complete:A_BomoEE_comp70026_c1_seq15
161bp
11748 O_BomoEE20574_complete:A_BomoEE_comp70026_c1_seq15
115bp
11749 O_BomoEE20575_complete:A_BomoEE_comp70026_c1_seq15
112bp
11750 O_BomoEE20576_complete:A_BomoEE_comp70026_c1_seq16
853bp
 PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11751 O_BomoEE20577_complete:A_BomoEE_comp70026_c1_seq16
161bp
11752 O_BomoEE20578_complete:A_BomoEE_comp70026_c1_seq16
115bp
11753 O_BomoEE20579_complete:A_BomoEE_comp70028_c0_seq1
497bp
 PREDICTED:_oocyte_zinc_finger_protein_XlCOF28_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11754 O_BomoEE2057_complete:A_BomoEE_comp33433_c0_seq1
105bp
11755 O_BomoEE20580_complete:A_BomoEE_comp70028_c0_seq1
115bp
11756 O_BomoEE20581_complete:A_BomoEE_comp70028_c0_seq1
108bp
11757 O_BomoEE20582_3prime_partial:A_BomoEE_comp70029_c0_seq1
236bp
 PREDICTED:_uncharacterized_protein_LOC101743760_[Bombyx_mori]
11758 O_BomoEE20583_5prime_partial:A_BomoEE_comp70029_c0_seq1
215bp
11759 O_BomoEE20584_5prime_partial:A_BomoEE_comp70029_c0_seq2
215bp
11760 O_BomoEE20585_3prime_partial:A_BomoEE_comp70029_c0_seq2
205bp
 PREDICTED:_uncharacterized_protein_LOC101743760_[Bombyx_mori]
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