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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11701 O_BomoEE20531_complete:A_BomoEE_comp70026_c1_seq5
391bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X2_[Chrysemys_picta_bellii]
GO:0001649 P osteoblast differentiation
GO:0004872 F signaling receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0044822 F RNA binding
11702 O_BomoEE20532_complete:A_BomoEE_comp70026_c1_seq5
161bp
11703 O_BomoEE20533_complete:A_BomoEE_comp70026_c1_seq5
115bp
11704 O_BomoEE20534_complete:A_BomoEE_comp70026_c1_seq6
466bp
 PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11705 O_BomoEE20535_complete:A_BomoEE_comp70026_c1_seq6
391bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X2_[Chrysemys_picta_bellii]
GO:0001649 P osteoblast differentiation
GO:0004872 F signaling receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0044822 F RNA binding
11706 O_BomoEE20536_complete:A_BomoEE_comp70026_c1_seq6
161bp
11707 O_BomoEE20537_complete:A_BomoEE_comp70026_c1_seq6
115bp
11708 O_BomoEE20538_complete:A_BomoEE_comp70026_c1_seq7
858bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11709 O_BomoEE20539_complete:A_BomoEE_comp70026_c1_seq7
161bp
11710 O_BomoEE2053_complete:A_BomoEE_comp33429_c1_seq1
258bp
 PREDICTED:_uncharacterized_protein_LOC101737032_[Bombyx_mori]
11711 O_BomoEE20540_complete:A_BomoEE_comp70026_c1_seq7
115bp
11712 O_BomoEE20541_complete:A_BomoEE_comp70026_c1_seq8
667bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11713 O_BomoEE20542_complete:A_BomoEE_comp70026_c1_seq8
161bp
11714 O_BomoEE20543_complete:A_BomoEE_comp70026_c1_seq8
115bp
11715 O_BomoEE20544_complete:A_BomoEE_comp70026_c1_seq8
112bp
11716 O_BomoEE20545_complete:A_BomoEE_comp70026_c1_seq9
484bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11717 O_BomoEE20546_complete:A_BomoEE_comp70026_c1_seq9
386bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X2_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11718 O_BomoEE20547_complete:A_BomoEE_comp70026_c1_seq9
161bp
11719 O_BomoEE20548_complete:A_BomoEE_comp70026_c1_seq9
115bp
11720 O_BomoEE20549_complete:A_BomoEE_comp70026_c1_seq10
528bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11721 O_BomoEE2054_complete:A_BomoEE_comp33432_c0_seq1
517bp
 karyopherin_alpha_3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0008022 F protein C-terminus binding
GO:0008139 F nuclear localization sequence binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
11722 O_BomoEE20550_complete:A_BomoEE_comp70026_c1_seq10
386bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X2_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11723 O_BomoEE20551_complete:A_BomoEE_comp70026_c1_seq10
161bp
11724 O_BomoEE20552_complete:A_BomoEE_comp70026_c1_seq10
115bp
11725 O_BomoEE20553_complete:A_BomoEE_comp70026_c1_seq11
484bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11726 O_BomoEE20554_complete:A_BomoEE_comp70026_c1_seq11
391bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X2_[Chrysemys_picta_bellii]
GO:0001649 P osteoblast differentiation
GO:0004872 F signaling receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0044822 F RNA binding
11727 O_BomoEE20555_complete:A_BomoEE_comp70026_c1_seq11
161bp
11728 O_BomoEE20556_complete:A_BomoEE_comp70026_c1_seq11
115bp
11729 O_BomoEE20557_complete:A_BomoEE_comp70026_c1_seq12
667bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11730 O_BomoEE20558_complete:A_BomoEE_comp70026_c1_seq12
161bp
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