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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11671 O_BomoEE20504_complete:A_BomoEE_comp70021_c0_seq1
367bp
 PREDICTED:_3-hydroxyisobutyryl-CoA_hydrolase,_mitochondrial_[Papilio_xuthus]
GO:0003860 F 3-hydroxyisobutyryl-CoA hydrolase activity
GO:0005739 C mitochondrion
GO:0006574 P valine catabolic process
GO:0009083 P branched-chain amino acid catabolic process
GO:0016787 F hydrolase activity
GO:0016836 F hydro-lyase activity
11672 O_BomoEE20505_complete:A_BomoEE_comp70023_c0_seq1
1816bp
 PREDICTED:_CAP-Gly_domain-containing_linker_protein_1-like_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0001666 P response to hypoxia
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008283 P cell population proliferation
GO:0019904 F protein domain specific binding
GO:0021987 P cerebral cortex development
GO:0022008 P neurogenesis
GO:0022027 P interkinetic nuclear migration
GO:0030097 P hemopoiesis
GO:0030953 P astral microtubule organization
GO:0032886 P regulation of microtubule-based process
GO:0042994 P cytoplasmic sequestering of transcription factor
GO:0051726 P regulation of cell cycle
11673 O_BomoEE20506_complete:A_BomoEE_comp70023_c0_seq1
143bp
11674 O_BomoEE20507_complete:A_BomoEE_comp70026_c1_seq1
484bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11675 O_BomoEE20508_complete:A_BomoEE_comp70026_c1_seq1
200bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X1_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11676 O_BomoEE20509_complete:A_BomoEE_comp70026_c1_seq1
161bp
11677 O_BomoEE2050_complete:A_BomoEE_comp33428_c0_seq1
140bp
11678 O_BomoEE20510_complete:A_BomoEE_comp70026_c1_seq1
159bp
11679 O_BomoEE20511_complete:A_BomoEE_comp70026_c1_seq1
115bp
11680 O_BomoEE20512_complete:A_BomoEE_comp70026_c1_seq1
107bp
11681 O_BomoEE20513_complete:A_BomoEE_comp70026_c1_seq2
528bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11682 O_BomoEE20514_complete:A_BomoEE_comp70026_c1_seq2
200bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X1_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11683 O_BomoEE20515_complete:A_BomoEE_comp70026_c1_seq2
161bp
11684 O_BomoEE20516_complete:A_BomoEE_comp70026_c1_seq2
159bp
11685 O_BomoEE20517_complete:A_BomoEE_comp70026_c1_seq2
115bp
11686 O_BomoEE20518_complete:A_BomoEE_comp70026_c1_seq2
107bp
11687 O_BomoEE20519_complete:A_BomoEE_comp70026_c1_seq3
466bp
 PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11688 O_BomoEE2051_complete:A_BomoEE_comp33429_c0_seq1
360bp
 innexin_2_[Bombyx_mori]
GO:0005243 F gap junction channel activity
GO:0005886 C plasma membrane
GO:0005921 C gap junction
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0055085 P transmembrane transport
11689 O_BomoEE20520_complete:A_BomoEE_comp70026_c1_seq3
200bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X1_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11690 O_BomoEE20521_complete:A_BomoEE_comp70026_c1_seq3
161bp
11691 O_BomoEE20522_complete:A_BomoEE_comp70026_c1_seq3
159bp
11692 O_BomoEE20523_complete:A_BomoEE_comp70026_c1_seq3
115bp
11693 O_BomoEE20524_complete:A_BomoEE_comp70026_c1_seq3
107bp
11694 O_BomoEE20525_complete:A_BomoEE_comp70026_c1_seq4
466bp
 PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
11695 O_BomoEE20526_complete:A_BomoEE_comp70026_c1_seq4
200bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_isoform_X1_[Chrysemys_picta_bellii]
GO:0001618 F virus receptor activity
GO:0001931 C uropod
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0046718 P viral entry into host cell
GO:0050900 P leukocyte migration
GO:0050902 P leukocyte adhesive activation
GO:0071354 P cellular response to interleukin-6
11696 O_BomoEE20527_complete:A_BomoEE_comp70026_c1_seq4
161bp
11697 O_BomoEE20528_complete:A_BomoEE_comp70026_c1_seq4
115bp
11698 O_BomoEE20529_complete:A_BomoEE_comp70026_c1_seq4
112bp
11699 O_BomoEE2052_complete:A_BomoEE_comp33429_c0_seq1
135bp
11700 O_BomoEE20530_complete:A_BomoEE_comp70026_c1_seq5
528bp
 PREDICTED:_roquin-1_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
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