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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
541 O_BomaMSG10488_complete:A_BomaMSG_c21461_g1_i2
443bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
542 O_BomaMSG10489_5prime_partial:A_BomaMSG_c21461_g1_i2
223bp
Endonuclease-reverse_transcriptase_[Operophtera_brumata]
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005606 C laminin-1 complex
GO:0005607 C laminin-2 complex
GO:0005615 C extracellular space
GO:0007155 P cell adhesion
GO:0021812 P neuronal-glial interaction involved in cerebral cortex radial glia guided migration
GO:0030198 P extracellular matrix organization
GO:0030335 P positive regulation of cell migration
GO:0031012 C extracellular matrix
GO:0031175 P neuron projection development
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035987 P endodermal cell differentiation
GO:0042476 P odontogenesis
GO:0043257 C laminin-8 complex
GO:0043259 C laminin-10 complex
GO:0048471 C perinuclear region of cytoplasm
GO:0050679 P positive regulation of epithelial cell proliferation
GO:0070062 C extracellular exosome
543 O_BomaMSG1048_5prime_partial:A_BomaMSG_c4544_g1_i1
105bp
544 O_BomaMSG10490_5prime_partial:A_BomaMSG_c21461_g1_i2
105bp
545 O_BomaMSG10491_complete:A_BomaMSG_c21461_g1_i3
443bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
546 O_BomaMSG10492_5prime_partial:A_BomaMSG_c21461_g1_i3
288bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
547 O_BomaMSG10493_5prime_partial:A_BomaMSG_c21461_g1_i3
105bp
548 O_BomaMSG10494_3prime_partial:A_BomaMSG_c21464_g1_i1
195bp
RNA-binding_protein_47_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0016556 P mRNA modification
GO:0030895 C apolipoprotein B mRNA editing enzyme complex
GO:0050821 P protein stabilization
549 O_BomaMSG10495_complete:A_BomaMSG_c21465_g1_i1
209bp
Rab7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000421 C autophagosome membrane
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005774 C vacuolar membrane
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006622 P protein targeting to lysosome
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007174 P epidermal growth factor catabolic process
GO:0007264 P small GTPase mediated signal transduction
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0019003 F GDP binding
GO:0019076 P viral release from host cell
GO:0022615 P protein to membrane docking
GO:0030670 C phagocytic vesicle membrane
GO:0030904 C retromer complex
GO:0031410 C cytoplasmic vesicle
GO:0031902 C late endosome membrane
GO:0032419 C extrinsic component of lysosome membrane
GO:0033162 C melanosome membrane
GO:0034045 C phagophore assembly site membrane
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043231 C intracellular membrane-bounded organelle
GO:0045022 P early endosome to late endosome transport
GO:0045335 C phagocytic vesicle
GO:0045732 P positive regulation of protein catabolic process
GO:0048524 P positive regulation of viral process
GO:0061724 P lipophagy
GO:0070062 C extracellular exosome
GO:0090383 P phagosome acidification
GO:0090385 P phagosome-lysosome fusion
GO:1903543 P positive regulation of exosomal secretion
GO:2000785 P regulation of autophagosome assembly
550 O_BomaMSG10496_internal:A_BomaMSG_c21466_g1_i1
268bp
DnaJ-8_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
551 O_BomaMSG10497_3prime_partial:A_BomaMSG_c21466_g1_i2
328bp
DnaJ_(Hsp40)_homolog_8_precursor_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
552 O_BomaMSG10498_internal:A_BomaMSG_c21468_g1_i1
372bp
unconventional_myosin-XV_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0008152 P metabolic process
GO:0016459 C myosin complex
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0042472 P inner ear morphogenesis
GO:0042995 C cell projection
GO:0070062 C extracellular exosome
553 O_BomaMSG10499_complete:A_BomaMSG_c21469_g1_i2
249bp
triosephosphate_isomerase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0004807 F triose-phosphate isomerase activity
GO:0005575 C cellular_component
GO:0006094 P gluconeogenesis
GO:0006096 P glycolytic process
GO:0006098 P pentose-phosphate shunt
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
554 O_BomaMSG1049_internal:A_BomaMSG_c4545_g1_i1
184bp
PREDICTED:_probable_tRNA_(uracil-O(2)-)-methyltransferase_isoform_X2_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
555 O_BomaMSG104_complete:A_BomaMSG_c507_g1_i1
297bp
uncharacterized_protein_LOC101747145_[Bombyx_mori]
GO:0004395 F hexaprenyldihydroxybenzoate methyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006071 P glycerol metabolic process
GO:0006744 P ubiquinone biosynthetic process
GO:0008168 F methyltransferase activity
GO:0008171 F O-methyltransferase activity
GO:0008425 F 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0008689 F 3-demethylubiquinone-9 3-O-methyltransferase activity
GO:0008757 F S-adenosylmethionine-dependent methyltransferase activity
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0032259 P methylation
556 O_BomaMSG10500_internal:A_BomaMSG_c21470_g1_i1
203bp
uncharacterized_protein_LOC101744415,_partial_[Bombyx_mori]
557 O_BomaMSG10501_5prime_partial:A_BomaMSG_c21470_g1_i1
123bp
558 O_BomaMSG10502_5prime_partial:A_BomaMSG_c21470_g1_i1
107bp
559 O_BomaMSG10503_3prime_partial:A_BomaMSG_c21471_g1_i1
284bp
JNK1/MAPK8-associated_membrane_protein_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031625 F ubiquitin protein ligase binding
560 O_BomaMSG10504_5prime_partial:A_BomaMSG_c21473_g1_i1
174bp
zinc_finger_protein_708_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000278 P mitotic cell cycle
GO:0000976 F transcription cis-regulatory region binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051567 P histone H3-K9 methylation
GO:0070491 F DNA-binding transcription factor binding
561 O_BomaMSG10505_5prime_partial:A_BomaMSG_c21473_g1_i2
294bp
zinc_finger_protein_708_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
562 O_BomaMSG10506_5prime_partial:A_BomaMSG_c21473_g1_i2
131bp
563 O_BomaMSG10507_5prime_partial:A_BomaMSG_c21473_g1_i3
264bp
zinc_finger_protein_708_isoform_X1_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
564 O_BomaMSG10508_5prime_partial:A_BomaMSG_c21473_g1_i3
100bp
565 O_BomaMSG10509_5prime_partial:A_BomaMSG_c21473_g1_i4
200bp
zinc_finger_protein_708_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
566 O_BomaMSG1050_5prime_partial:A_BomaMSG_c4545_g1_i1
103bp
567 O_BomaMSG10510_5prime_partial:A_BomaMSG_c21474_g1_i1
349bp
uncharacterized_protein_LOC101743211_[Bombyx_mori]
568 O_BomaMSG10511_complete:A_BomaMSG_c21474_g1_i1
149bp
569 O_BomaMSG10512_5prime_partial:A_BomaMSG_c21474_g1_i2
321bp
uncharacterized_protein_LOC101743211_[Bombyx_mori]
570 O_BomaMSG10513_complete:A_BomaMSG_c21474_g1_i2
149bp
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