Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
571	O_BomaMSG10514_3prime_partial:A_BomaMSG_c21475_g1_i1 243bp		exosome_complex_component_RRP41_[Bombyx_mori]	GO:0000175 F 3'-5'-exoribonuclease activity GO:0000176 C nuclear exosome (RNase complex) GO:0000177 C cytoplasmic exosome (RNase complex) GO:0000178 C exosome (RNase complex) GO:0000460 P maturation of 5.8S rRNA GO:0000956 P nuclear-transcribed mRNA catabolic process GO:0003723 F RNA binding GO:0004532 F exoribonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006364 P rRNA processing GO:0016075 P rRNA catabolic process GO:0017091 F mRNA 3'-UTR AU-rich region binding GO:0030307 P positive regulation of cell growth GO:0031125 P rRNA 3'-end processing GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' GO:0034475 P U4 snRNA 3'-end processing GO:0035327 C euchromatin GO:0043488 P regulation of mRNA stability GO:0043928 P exonucleolytic catabolism of deadenylated mRNA GO:0045006 P DNA deamination GO:0051607 P defense response to virus GO:0071028 P nuclear mRNA surveillance GO:0071044 P histone mRNA catabolic process GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
572	O_BomaMSG10515_complete:A_BomaMSG_c21476_g1_i1 135bp		CDGSH_iron-sulfur_domain-containing_protein_3,_mitochondrial_isoform_X1_[Bombyx_mori]	GO:0005739 C mitochondrion GO:0043231 C intracellular membrane-bounded organelle GO:0046872 F metal ion binding GO:0051536 F iron-sulfur cluster binding GO:0051537 F 2 iron, 2 sulfur cluster binding
573	O_BomaMSG10516_internal:A_BomaMSG_c21477_g1_i1 552bp		LOW_QUALITY_PROTEIN:_JNK-interacting_protein_3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005078 F MAP-kinase scaffold activity GO:0005737 C cytoplasm GO:0008088 P axo-dendritic transport GO:0009967 P positive regulation of signal transduction GO:0016192 P vesicle-mediated transport GO:0019894 F kinesin binding GO:0030140 C trans-Golgi network transport vesicle GO:0043005 C neuron projection GO:0046328 P regulation of JNK cascade
574	O_BomaMSG10517_internal:A_BomaMSG_c21477_g1_i2 558bp		LOW_QUALITY_PROTEIN:_JNK-interacting_protein_3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005078 F MAP-kinase scaffold activity GO:0005737 C cytoplasm GO:0008088 P axo-dendritic transport GO:0009967 P positive regulation of signal transduction GO:0016192 P vesicle-mediated transport GO:0019894 F kinesin binding GO:0030140 C trans-Golgi network transport vesicle GO:0043005 C neuron projection GO:0046328 P regulation of JNK cascade
575	O_BomaMSG10518_5prime_partial:A_BomaMSG_c21477_g1_i3 547bp		LOW_QUALITY_PROTEIN:_JNK-interacting_protein_3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005078 F MAP-kinase scaffold activity GO:0005737 C cytoplasm GO:0008088 P axo-dendritic transport GO:0009967 P positive regulation of signal transduction GO:0016192 P vesicle-mediated transport GO:0019894 F kinesin binding GO:0030140 C trans-Golgi network transport vesicle GO:0043005 C neuron projection GO:0046328 P regulation of JNK cascade
576	O_BomaMSG10519_complete:A_BomaMSG_c21479_g1_i1 467bp		putative_inorganic_phosphate_cotransporter_[Bombyx_mori]	GO:0006810 P transport GO:0006811 P ion transport GO:0006814 P sodium ion transport GO:0006820 P anion transport GO:0015114 F phosphate ion transmembrane transporter activity GO:0015293 F symporter activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0035435 P phosphate ion transmembrane transport GO:0055085 P transmembrane transport
577	O_BomaMSG1051_3prime_partial:A_BomaMSG_c4552_g1_i1 114bp		zinc_finger_protein_81_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0046872 F metal ion binding
578	O_BomaMSG10520_internal:A_BomaMSG_c21479_g1_i2 100bp		putative_inorganic_phosphate_cotransporter_[Bombyx_mori]	GO:0006810 P transport GO:0006811 P ion transport GO:0006814 P sodium ion transport GO:0015114 F phosphate ion transmembrane transporter activity GO:0015293 F symporter activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0035435 P phosphate ion transmembrane transport GO:0055085 P transmembrane transport
579	O_BomaMSG10521_internal:A_BomaMSG_c21479_g1_i2 99bp
580	O_BomaMSG10522_5prime_partial:A_BomaMSG_c21482_g1_i1 240bp		uncharacterized_protein_LOC101735997_[Bombyx_mori]	GO:0000398 P mRNA splicing, via spliceosome GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0045171 C intercellular bridge
581	O_BomaMSG10523_complete:A_BomaMSG_c21482_g1_i3 121bp		uncharacterized_protein_LOC101735997_[Bombyx_mori]
582	O_BomaMSG10524_3prime_partial:A_BomaMSG_c21483_g1_i1 171bp		myristoylated_alanine-rich_C-kinase_substrate_[Bombyx_mori]
583	O_BomaMSG10525_3prime_partial:A_BomaMSG_c21483_g1_i2 171bp		myristoylated_alanine-rich_C-kinase_substrate_[Bombyx_mori]
584	O_BomaMSG10526_3prime_partial:A_BomaMSG_c21483_g1_i3 171bp		myristoylated_alanine-rich_C-kinase_substrate_[Bombyx_mori]
585	O_BomaMSG10527_internal:A_BomaMSG_c21485_g1_i1 376bp		zinc_finger_CCHC_domain-containing_protein_4_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0008168 F methyltransferase activity GO:0008270 F zinc ion binding GO:0016740 F transferase activity GO:0032259 P methylation GO:0046872 F metal ion binding
586	O_BomaMSG10528_3prime_partial:A_BomaMSG_c21485_g1_i2 401bp		zinc_finger_CCHC_domain-containing_protein_4_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0008168 F methyltransferase activity GO:0008270 F zinc ion binding GO:0016740 F transferase activity GO:0032259 P methylation GO:0046872 F metal ion binding
587	O_BomaMSG10529_5prime_partial:A_BomaMSG_c21486_g1_i1 200bp		unc-112-related_protein_isoform_X2_[Bombyx_mori]	GO:0005737 C cytoplasm GO:0007155 P cell adhesion GO:0007160 P cell-matrix adhesion GO:0048738 P cardiac muscle tissue development GO:0050829 P defense response to Gram-negative bacterium GO:0050839 F cell adhesion molecule binding
588	O_BomaMSG1052_internal:A_BomaMSG_c4554_g1_i1 180bp		caspase-4_[Bombyx_mori]	GO:0004197 F cysteine-type endopeptidase activity GO:0005737 C cytoplasm GO:0006508 P proteolysis GO:0006915 P apoptotic process GO:0008233 F peptidase activity GO:0008234 F cysteine-type peptidase activity GO:0016787 F hydrolase activity
589	O_BomaMSG10530_5prime_partial:A_BomaMSG_c21486_g1_i1 114bp
590	O_BomaMSG10531_3prime_partial:A_BomaMSG_c21487_g1_i1 157bp		replication_protein_A2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus
591	O_BomaMSG10532_internal:A_BomaMSG_c21488_g1_i1 175bp		protein_ABHD18_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005576 C extracellular region GO:0008150 P biological_process
592	O_BomaMSG10533_internal:A_BomaMSG_c21488_g2_i1 159bp		protein_ABHD18_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005576 C extracellular region GO:0008150 P biological_process
593	O_BomaMSG10534_internal:A_BomaMSG_c21488_g2_i2 321bp		protein_ABHD18_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005576 C extracellular region GO:0008150 P biological_process
594	O_BomaMSG10535_complete:A_BomaMSG_c21488_g2_i2 147bp
595	O_BomaMSG10536_internal:A_BomaMSG_c21488_g2_i3 397bp		protein_ABHD18_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005576 C extracellular region GO:0008150 P biological_process
596	O_BomaMSG10537_complete:A_BomaMSG_c21488_g2_i3 147bp
597	O_BomaMSG10538_internal:A_BomaMSG_c21489_g1_i1 241bp		uncharacterized_protein_LOC101742065_isoform_X1_[Bombyx_mori]
598	O_BomaMSG10539_5prime_partial:A_BomaMSG_c21489_g1_i1 142bp
599	O_BomaMSG1053_internal:A_BomaMSG_c4558_g1_i1 107bp		G2/M_phase-specific_E3_ubiquitin-protein_ligase_[Bombyx_mori]	GO:0000209 P protein polyubiquitination GO:0001824 P blastocyst development GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006915 P apoptotic process GO:0007275 P multicellular organism development GO:0008270 F zinc ion binding GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0046872 F metal ion binding GO:0061630 F ubiquitin protein ligase activity GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
600	O_BomaMSG10540_complete:A_BomaMSG_c21489_g1_i1 121bp