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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3901 O_BomaMSG13511_complete:A_BomaMSG_c23038_g1_i1
298bp
neuroguidin_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
3902 O_BomaMSG13512_internal:A_BomaMSG_c23040_g1_i1
212bp
3903 O_BomaMSG13513_5prime_partial:A_BomaMSG_c23040_g1_i1
201bp
pleiotropic_regulator_1_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
3904 O_BomaMSG13514_3prime_partial:A_BomaMSG_c23040_g1_i1
127bp
3905 O_BomaMSG13515_3prime_partial:A_BomaMSG_c23040_g2_i1
256bp
pleiotropic_regulator_1_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
3906 O_BomaMSG13516_internal:A_BomaMSG_c23040_g2_i2
116bp
pleiotropic_regulator_1_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
3907 O_BomaMSG13517_5prime_partial:A_BomaMSG_c23041_g1_i2
198bp
mitochondrial_import_receptor_subunit_TOM70_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3908 O_BomaMSG13518_internal:A_BomaMSG_c23042_g1_i1
527bp
proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
3909 O_BomaMSG13519_3prime_partial:A_BomaMSG_c23042_g1_i1
185bp
3910 O_BomaMSG1351_3prime_partial:A_BomaMSG_c5631_g1_i1
129bp
3911 O_BomaMSG13520_5prime_partial:A_BomaMSG_c23042_g1_i1
102bp
3912 O_BomaMSG13521_complete:A_BomaMSG_c23044_g2_i1
151bp
actin-related_protein_2/3_complex_subunit_5_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005885 C Arp2/3 protein complex
GO:0005925 C focal adhesion
GO:0015629 C actin cytoskeleton
GO:0030833 P regulation of actin filament polymerization
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0070062 C extracellular exosome
3913 O_BomaMSG13522_5prime_partial:A_BomaMSG_c23044_g2_i2
136bp
actin-related_protein_2/3_complex_subunit_5_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005885 C Arp2/3 protein complex
GO:0005925 C focal adhesion
GO:0015629 C actin cytoskeleton
GO:0030833 P regulation of actin filament polymerization
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0070062 C extracellular exosome
3914 O_BomaMSG13523_5prime_partial:A_BomaMSG_c23045_g1_i1
435bp
ubiquitin_carboxyl-terminal_hydrolase_17_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
3915 O_BomaMSG13524_complete:A_BomaMSG_c23045_g1_i1
100bp
3916 O_BomaMSG13525_5prime_partial:A_BomaMSG_c23045_g1_i2
381bp
ubiquitin_carboxyl-terminal_hydrolase_17_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
3917 O_BomaMSG13526_complete:A_BomaMSG_c23045_g1_i2
100bp
3918 O_BomaMSG13527_3prime_partial:A_BomaMSG_c23046_g1_i1
657bp
solute_carrier_organic_anion_transporter_family_member_2A1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006857 P oligopeptide transport
GO:0008514 F organic anion transmembrane transporter activity
GO:0009925 C basal plasma membrane
GO:0009986 C cell surface
GO:0015198 F oligopeptide transmembrane transporter activity
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0015711 P organic anion transport
GO:0015732 P prostaglandin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0043252 P sodium-independent organic anion transport
3919 O_BomaMSG13528_5prime_partial:A_BomaMSG_c23046_g1_i1
311bp
3920 O_BomaMSG13529_complete:A_BomaMSG_c23046_g1_i1
103bp
3921 O_BomaMSG1352_complete:A_BomaMSG_c5631_g1_i1
108bp
3922 O_BomaMSG13530_3prime_partial:A_BomaMSG_c23046_g1_i2
657bp
solute_carrier_organic_anion_transporter_family_member_2A1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006857 P oligopeptide transport
GO:0008514 F organic anion transmembrane transporter activity
GO:0009925 C basal plasma membrane
GO:0009986 C cell surface
GO:0015198 F oligopeptide transmembrane transporter activity
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0015711 P organic anion transport
GO:0015732 P prostaglandin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0043252 P sodium-independent organic anion transport
3923 O_BomaMSG13531_5prime_partial:A_BomaMSG_c23046_g1_i2
311bp
3924 O_BomaMSG13532_complete:A_BomaMSG_c23046_g1_i2
103bp
3925 O_BomaMSG13533_internal:A_BomaMSG_c23046_g1_i3
345bp
solute_carrier_organic_anion_transporter_family_member_2A1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043252 P sodium-independent organic anion transport
3926 O_BomaMSG13534_5prime_partial:A_BomaMSG_c23046_g1_i3
311bp
3927 O_BomaMSG13535_3prime_partial:A_BomaMSG_c23046_g1_i4
657bp
solute_carrier_organic_anion_transporter_family_member_2A1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006857 P oligopeptide transport
GO:0008514 F organic anion transmembrane transporter activity
GO:0009925 C basal plasma membrane
GO:0009986 C cell surface
GO:0015198 F oligopeptide transmembrane transporter activity
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0015711 P organic anion transport
GO:0015732 P prostaglandin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0043252 P sodium-independent organic anion transport
3928 O_BomaMSG13536_5prime_partial:A_BomaMSG_c23046_g1_i4
311bp
3929 O_BomaMSG13537_complete:A_BomaMSG_c23046_g1_i4
103bp
3930 O_BomaMSG13538_internal:A_BomaMSG_c23047_g1_i1
142bp
inducible_metalloproteinase_inhibitor_protein-like,_partial_[Bombyx_mori]
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