SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/24827
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3931 O_BomaMSG13539_5prime_partial:A_BomaMSG_c23047_g1_i3
182bp
inducible_metalloproteinase_inhibitor_protein-like,_partial_[Bombyx_mori]
3932 O_BomaMSG1353_internal:A_BomaMSG_c5634_g1_i1
108bp
anaphase-promoting_complex_subunit_4_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005680 C anaphase-promoting complex
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0019903 F protein phosphatase binding
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0051301 P cell division
GO:0070979 P protein K11-linked ubiquitination
3933 O_BomaMSG13540_5prime_partial:A_BomaMSG_c23047_g1_i4
106bp
inducible_metalloproteinase_inhibitor_protein-like,_partial_[Bombyx_mori]
3934 O_BomaMSG13541_internal:A_BomaMSG_c23047_g1_i5
218bp
inducible_metalloproteinase_inhibitor_protein-like,_partial_[Bombyx_mori]
3935 O_BomaMSG13542_internal:A_BomaMSG_c23049_g1_i1
387bp
myeloid_differentiation_primary_response_protein_MyD88_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0002755 P MyD88-dependent toll-like receptor signaling pathway
GO:0005737 C cytoplasm
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 P innate immune response
GO:0070976 F TIR domain binding
3936 O_BomaMSG13543_3prime_partial:A_BomaMSG_c23049_g1_i2
388bp
myeloid_differentiation_primary_response_protein_MyD88_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0002755 P MyD88-dependent toll-like receptor signaling pathway
GO:0005737 C cytoplasm
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 P innate immune response
GO:0070976 F TIR domain binding
3937 O_BomaMSG13544_complete:A_BomaMSG_c23049_g1_i2
110bp
3938 O_BomaMSG13545_3prime_partial:A_BomaMSG_c23049_g1_i3
388bp
myeloid_differentiation_primary_response_protein_MyD88_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0002755 P MyD88-dependent toll-like receptor signaling pathway
GO:0005737 C cytoplasm
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 P innate immune response
GO:0070976 F TIR domain binding
3939 O_BomaMSG13546_internal:A_BomaMSG_c23050_g1_i1
110bp
inhibitor_of_nuclear_factor_kappa-B_kinase_subunit_beta_[Bombyx_mori]
3940 O_BomaMSG13547_3prime_partial:A_BomaMSG_c23050_g1_i3
597bp
inhibitor_of_nuclear_factor_kappa-B_kinase_subunit_beta_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0007252 P I-kappaB phosphorylation
GO:0008384 F IkappaB kinase activity
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019901 F protein kinase binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0035509 P negative regulation of myosin-light-chain-phosphatase activity
GO:0042325 P regulation of phosphorylation
GO:0042501 P serine phosphorylation of STAT protein
GO:0042803 F protein homodimerization activity
GO:0045121 C membrane raft
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0070498 P interleukin-1-mediated signaling pathway
GO:0071356 P cellular response to tumor necrosis factor
GO:0090002 P protein localization to plasma membrane
GO:0097110 F scaffold protein binding
GO:1903140 P regulation of establishment of endothelial barrier
GO:1903347 P negative regulation of bicellular tight junction assembly
3941 O_BomaMSG13548_internal:A_BomaMSG_c23051_g2_i1
106bp
uncharacterized_protein_LOC101742038_[Bombyx_mori]
3942 O_BomaMSG13549_internal:A_BomaMSG_c23051_g2_i2
340bp
uncharacterized_protein_LOC101742038_[Bombyx_mori]
3943 O_BomaMSG1354_internal:A_BomaMSG_c5640_g1_i1
127bp
uncharacterized_protein_LOC110384947,_partial_[Bombyx_mori]
3944 O_BomaMSG13550_complete:A_BomaMSG_c23053_g1_i1
357bp
protein_arginine_N-methyltransferase_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0008757 F S-adenosylmethionine-dependent methyltransferase activity
GO:0016020 C membrane
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0034969 P histone arginine methylation
GO:0035241 F protein-arginine omega-N monomethyltransferase activity
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
3945 O_BomaMSG13551_3prime_partial:A_BomaMSG_c23054_g1_i2
357bp
protein_KRI1_homolog_[Bombyx_mori]
3946 O_BomaMSG13552_5prime_partial:A_BomaMSG_c23054_g1_i2
140bp
3947 O_BomaMSG13553_complete:A_BomaMSG_c23055_g1_i1
330bp
WD_repeat_domain_61_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0055087 C Ski complex
3948 O_BomaMSG13554_complete:A_BomaMSG_c23055_g1_i2
116bp
WD_repeat_domain_61_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0055087 C Ski complex
3949 O_BomaMSG13555_5prime_partial:A_BomaMSG_c23056_g1_i2
542bp
ubiquitin_conjugation_factor_E4_A_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0061630 F ubiquitin protein ligase activity
3950 O_BomaMSG13556_complete:A_BomaMSG_c23057_g1_i1
288bp
carboxyl_terminus_of_heat_shock_cognate70_interacting_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0001664 F G protein-coupled receptor binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0030674 F protein-macromolecule adaptor activity
GO:0030911 F TPR domain binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031371 C ubiquitin conjugating enzyme complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0031943 P regulation of glucocorticoid metabolic process
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036503 P ERAD pathway
GO:0038128 P ERBB2 signaling pathway
GO:0042405 C nuclear inclusion body
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046332 F SMAD binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051604 P protein maturation
GO:0051787 F misfolded protein binding
GO:0051865 P protein autoubiquitination
GO:0051879 F Hsp90 protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:1904264 F ubiquitin protein ligase activity
3951 O_BomaMSG13557_complete:A_BomaMSG_c23057_g1_i2
284bp
carboxyl_terminus_of_heat_shock_cognate70_interacting_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0001664 F G protein-coupled receptor binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0030674 F protein-macromolecule adaptor activity
GO:0030911 F TPR domain binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031371 C ubiquitin conjugating enzyme complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0031943 P regulation of glucocorticoid metabolic process
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036503 P ERAD pathway
GO:0038128 P ERBB2 signaling pathway
GO:0042405 C nuclear inclusion body
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046332 F SMAD binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051604 P protein maturation
GO:0051787 F misfolded protein binding
GO:0051865 P protein autoubiquitination
GO:0051879 F Hsp90 protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:1904264 F ubiquitin protein ligase activity
3952 O_BomaMSG13558_complete:A_BomaMSG_c23058_g1_i1
264bp
acyl-CoA-binding_domain-containing_protein_5_isoform_X2_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3953 O_BomaMSG13559_complete:A_BomaMSG_c23058_g1_i1
122bp
3954 O_BomaMSG1355_internal:A_BomaMSG_c5654_g1_i1
103bp
uncharacterized_protein_LOC101740865_[Bombyx_mori]
3955 O_BomaMSG13560_complete:A_BomaMSG_c23058_g1_i2
264bp
acyl-CoA-binding_domain-containing_protein_5_isoform_X2_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3956 O_BomaMSG13561_complete:A_BomaMSG_c23058_g1_i2
122bp
3957 O_BomaMSG13562_5prime_partial:A_BomaMSG_c23059_g1_i2
389bp
protein_AAR2_homolog_[Bombyx_mori]
GO:0000244 P spliceosomal tri-snRNP complex assembly
3958 O_BomaMSG13563_3prime_partial:A_BomaMSG_c23060_g1_i1
492bp
coiled-coil_domain-containing_protein_73-like_[Bombyx_mori]
3959 O_BomaMSG13564_complete:A_BomaMSG_c23062_g1_i2
419bp
actin-related_protein_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000902 P cell morphogenesis
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005885 C Arp2/3 protein complex
GO:0006886 P intracellular protein transport
GO:0006909 P phagocytosis
GO:0007010 P cytoskeleton organization
GO:0007015 P actin filament organization
GO:0007413 P axonal fasciculation
GO:0007520 P myoblast fusion
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0010592 P positive regulation of lamellipodium assembly
GO:0015629 C actin cytoskeleton
GO:0022416 P chaeta development
GO:0030027 C lamellipodium
GO:0030036 P actin cytoskeleton organization
GO:0030037 P actin filament reorganization involved in cell cycle
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030713 P ovarian follicle cell stalk formation
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0051491 P positive regulation of filopodium assembly
GO:0072553 P terminal button organization
GO:0097320 P plasma membrane tubulation
3960 O_BomaMSG13565_complete:A_BomaMSG_c23062_g1_i3
419bp
actin-related_protein_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000902 P cell morphogenesis
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005885 C Arp2/3 protein complex
GO:0006886 P intracellular protein transport
GO:0006909 P phagocytosis
GO:0007010 P cytoskeleton organization
GO:0007015 P actin filament organization
GO:0007413 P axonal fasciculation
GO:0007520 P myoblast fusion
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0010592 P positive regulation of lamellipodium assembly
GO:0015629 C actin cytoskeleton
GO:0022416 P chaeta development
GO:0030027 C lamellipodium
GO:0030036 P actin cytoskeleton organization
GO:0030037 P actin filament reorganization involved in cell cycle
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030713 P ovarian follicle cell stalk formation
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0051491 P positive regulation of filopodium assembly
GO:0072553 P terminal button organization
GO:0097320 P plasma membrane tubulation
previous next from show/24827

- SilkBase 1999-2023 -