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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
31 O_BomaMSG10028_internal:A_BomaMSG_c21168_g1_i1
232bp
DNA_topoisomerase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003918 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006265 P DNA topological change
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
32 O_BomaMSG10029_internal:A_BomaMSG_c21168_g1_i2
301bp
DNA_topoisomerase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003918 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006265 P DNA topological change
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
33 O_BomaMSG1002_internal:A_BomaMSG_c4283_g1_i1
111bp
ovarian_tumor_protein_isoform_X1_[Bombyx_mori]
34 O_BomaMSG10030_3prime_partial:A_BomaMSG_c21169_g1_i1
149bp
ML-domain_containing_secreted_protein_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
35 O_BomaMSG10031_3prime_partial:A_BomaMSG_c21172_g1_i1
372bp
uncharacterized_protein_LOC110384729_[Bombyx_mori]
36 O_BomaMSG10032_3prime_partial:A_BomaMSG_c21172_g1_i2
372bp
uncharacterized_protein_LOC110384729_[Bombyx_mori]
37 O_BomaMSG10033_3prime_partial:A_BomaMSG_c21173_g1_i1
171bp
LOW_QUALITY_PROTEIN:_protein_FAM76A_[Bombyx_mori]
GO:0004175 F endopeptidase activity
GO:0005634 C nucleus
GO:0016926 P protein desumoylation
GO:0016929 F SUMO-specific protease activity
38 O_BomaMSG10034_5prime_partial:A_BomaMSG_c21174_g1_i2
102bp
methyltransferase-like_26_[Bombyx_mori]
39 O_BomaMSG10035_complete:A_BomaMSG_c21174_g1_i3
227bp
methyltransferase-like_26_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
40 O_BomaMSG10036_complete:A_BomaMSG_c21175_g1_i1
240bp
NECAP-like_protein_CG9132_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030125 C clathrin vesicle coat
41 O_BomaMSG10037_5prime_partial:A_BomaMSG_c21176_g1_i1
300bp
histone_deacetylase_3_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0003714 F transcription corepressor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0017053 C transcription repressor complex
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0070491 F DNA-binding transcription factor binding
GO:0070932 P histone H3 deacetylation
42 O_BomaMSG10038_complete:A_BomaMSG_c21177_g1_i1
196bp
akirin_protein_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002376 P immune system process
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005719 C euchromatin
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007526 P larval somatic muscle development
GO:0016203 P muscle attachment
GO:0035060 C brahma complex
GO:0045087 P innate immune response
GO:0045088 P regulation of innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050829 P defense response to Gram-negative bacterium
43 O_BomaMSG10039_3prime_partial:A_BomaMSG_c21177_g1_i1
135bp
44 O_BomaMSG1003_internal:A_BomaMSG_c4324_g1_i1
148bp
drebrin-like_protein_B_[Bombyx_mori]
GO:0001786 F phosphatidylserine binding
GO:0003779 F actin binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0016477 P cell migration
GO:0022416 P chaeta development
GO:0030424 C axon
GO:0030426 C growth cone
GO:0030864 C cortical actin cytoskeleton
GO:0031594 C neuromuscular junction
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0051015 F actin filament binding
GO:0061176 C type Ib terminal bouton
GO:0061177 C type Is terminal bouton
GO:0072553 P terminal button organization
45 O_BomaMSG10040_internal:A_BomaMSG_c21178_g1_i1
257bp
pre-mRNA-splicing_factor_Slu7_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0046872 F metal ion binding
46 O_BomaMSG10041_internal:A_BomaMSG_c21179_g1_i1
381bp
tensin_isoform_X4_[Bombyx_mori]
47 O_BomaMSG10042_5prime_partial:A_BomaMSG_c21179_g1_i1
123bp
48 O_BomaMSG10043_complete:A_BomaMSG_c21179_g1_i1
100bp
49 O_BomaMSG10044_3prime_partial:A_BomaMSG_c21180_g1_i1
221bp
TBC1_domain_family_member_9_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005509 F calcium ion binding
GO:0005622 C intracellular anatomical structure
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0046872 F metal ion binding
GO:0090630 P activation of GTPase activity
50 O_BomaMSG10045_5prime_partial:A_BomaMSG_c21182_g1_i2
238bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740701_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005886 C plasma membrane
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0007605 P sensory perception of sound
GO:0008104 P protein localization
GO:0009881 F photoreceptor activity
GO:0016020 C membrane
GO:0016027 C inaD signaling complex
GO:0016028 C rhabdomere
GO:0016059 P deactivation of rhodopsin mediated signaling
GO:0017022 F myosin binding
GO:0030159 F signaling receptor complex adaptor activity
GO:0031473 F myosin III binding
GO:0050896 P response to stimulus
GO:0050962 P detection of light stimulus involved in sensory perception
GO:0071482 P cellular response to light stimulus
51 O_BomaMSG10046_complete:A_BomaMSG_c21182_g1_i3
245bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740701_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005886 C plasma membrane
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0007605 P sensory perception of sound
GO:0008104 P protein localization
GO:0009881 F photoreceptor activity
GO:0016020 C membrane
GO:0016027 C inaD signaling complex
GO:0016028 C rhabdomere
GO:0016059 P deactivation of rhodopsin mediated signaling
GO:0017022 F myosin binding
GO:0030159 F signaling receptor complex adaptor activity
GO:0031473 F myosin III binding
GO:0050896 P response to stimulus
GO:0050962 P detection of light stimulus involved in sensory perception
GO:0071482 P cellular response to light stimulus
52 O_BomaMSG10047_5prime_partial:A_BomaMSG_c21183_g1_i1
110bp
53 O_BomaMSG10048_5prime_partial:A_BomaMSG_c21184_g1_i1
351bp
LIM_domain_only_protein_7_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0031032 P actomyosin structure organization
GO:0046872 F metal ion binding
54 O_BomaMSG10049_5prime_partial:A_BomaMSG_c21184_g1_i2
239bp
LIM_domain_only_protein_7_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0031032 P actomyosin structure organization
GO:0046872 F metal ion binding
55 O_BomaMSG1004_5prime_partial:A_BomaMSG_c4325_g1_i1
129bp
group_XIIB_secretory_phospholipase_A2-like_protein_isoform_X4_[Bombyx_mori]
GO:0004623 F phospholipase A2 activity
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
56 O_BomaMSG10050_3prime_partial:A_BomaMSG_c21185_g1_i1
181bp
HD_domain-containing_protein_2_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
57 O_BomaMSG10051_complete:A_BomaMSG_c21186_g1_i1
290bp
15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004957 F prostaglandin E receptor activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006693 P prostaglandin metabolic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007565 P female pregnancy
GO:0007567 P parturition
GO:0008152 P metabolic process
GO:0016323 C basolateral plasma membrane
GO:0016404 F 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016491 F oxidoreductase activity
GO:0030728 P ovulation
GO:0045786 P negative regulation of cell cycle
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070403 F NAD+ binding
GO:0070493 P thrombin-activated receptor signaling pathway
GO:0097070 P ductus arteriosus closure
58 O_BomaMSG10052_complete:A_BomaMSG_c21186_g1_i1
118bp
59 O_BomaMSG10053_5prime_partial:A_BomaMSG_c21187_g2_i1
161bp
fork_head_domain-containing_protein_FD4_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
60 O_BomaMSG10054_complete:A_BomaMSG_c21195_g1_i1
996bp
LOW_QUALITY_PROTEIN:_26S_proteasome_non-ATPase_regulatory_subunit_1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0004175 F endopeptidase activity
GO:0005634 C nucleus
GO:0005838 C proteasome regulatory particle
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0030234 F enzyme regulator activity
GO:0034515 C proteasome storage granule
GO:0042176 P regulation of protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050790 P regulation of catalytic activity
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