SearchView

Search ORF from Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

O_BomaMSG10000_3prime_partial:A_BomaMSG_c21149_g1_i2

282bp

histone-lysine_N-methyltransferase_EHMT1_isoform_X1_[Bombyx_mori]

O_BomaMSG10001_3prime_partial:A_BomaMSG_c21150_g1_i1

375bp

calcium-binding_mitochondrial_carrier_protein_SCaMC-2_isoform_X1_[Bombyx_mori]

GO:0003735	F	structural constituent of ribosome
GO:0005509	F	calcium ion binding
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0006412	P	translation
GO:0006810	P	transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0046872	F	metal ion binding
GO:0055085	P	transmembrane transport

O_BomaMSG10002_internal:A_BomaMSG_c21150_g1_i2

219bp

calcium-binding_mitochondrial_carrier_protein_SCaMC-2_isoform_X4_[Bombyx_mori]

GO:0002021	P	response to dietary excess
GO:0003735	F	structural constituent of ribosome
GO:0005509	F	calcium ion binding
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0006412	P	translation
GO:0006810	P	transport
GO:0014823	P	response to activity
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0032094	P	response to food
GO:0035264	P	multicellular organism growth
GO:0043010	P	camera-type eye development
GO:0043231	C	intracellular membrane-bounded organelle
GO:0045333	P	cellular respiration
GO:0046034	P	ATP metabolic process
GO:0046872	F	metal ion binding
GO:0055085	P	transmembrane transport
GO:0060612	P	adipose tissue development
GO:0070062	C	extracellular exosome
GO:0070588	P	calcium ion transmembrane transport

O_BomaMSG10003_complete:A_BomaMSG_c21151_g1_i1

189bp

clavesin-1_isoform_X1_[Bombyx_mori]

GO:0005215	F	transporter activity
GO:0005622	C	intracellular anatomical structure
GO:0005768	C	endosome
GO:0005794	C	Golgi apparatus
GO:0005802	C	trans-Golgi network
GO:0006810	P	transport
GO:0007040	P	lysosome organization
GO:0008289	F	lipid binding
GO:0016020	C	membrane
GO:0030136	C	clathrin-coated vesicle
GO:0031410	C	cytoplasmic vesicle
GO:0031901	C	early endosome membrane
GO:0080025	F	phosphatidylinositol-3,5-bisphosphate binding

O_BomaMSG10004_complete:A_BomaMSG_c21151_g1_i2

189bp

clavesin-1_isoform_X1_[Bombyx_mori]

GO:0005215	F	transporter activity
GO:0005622	C	intracellular anatomical structure
GO:0005768	C	endosome
GO:0005794	C	Golgi apparatus
GO:0005802	C	trans-Golgi network
GO:0006810	P	transport
GO:0007040	P	lysosome organization
GO:0008289	F	lipid binding
GO:0016020	C	membrane
GO:0030136	C	clathrin-coated vesicle
GO:0031410	C	cytoplasmic vesicle
GO:0031901	C	early endosome membrane
GO:0080025	F	phosphatidylinositol-3,5-bisphosphate binding

O_BomaMSG10005_internal:A_BomaMSG_c21152_g1_i1

116bp

protein-S-isoprenylcysteine_O-methyltransferase_[Helicoverpa_armigera]

GO:0004671	F	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0006481	P	C-terminal protein methylation
GO:0008168	F	methyltransferase activity
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016740	F	transferase activity
GO:0032259	P	methylation

O_BomaMSG10006_complete:A_BomaMSG_c21153_g1_i1

130bp

lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_isoform_X1_[Bombyx_mori]

GO:0005125	F	cytokine activity
GO:0005737	C	cytoplasm
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated

O_BomaMSG10007_5prime_partial:A_BomaMSG_c21153_g1_i1

115bp

O_BomaMSG10008_3prime_partial:A_BomaMSG_c21154_g1_i2

262bp

NFU1_iron-sulfur_cluster_scaffold_homolog,_mitochondrial_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005506	F	iron ion binding
GO:0005575	C	cellular_component
GO:0005739	C	mitochondrion
GO:0008150	P	biological_process
GO:0016226	P	iron-sulfur cluster assembly
GO:0051536	F	iron-sulfur cluster binding

O_BomaMSG10009_3prime_partial:A_BomaMSG_c21155_g1_i2

591bp

pentatricopeptide_repeat-containing_protein_1,_mitochondrial_[Bombyx_mori]

GO:0000049	F	tRNA binding
GO:0005739	C	mitochondrion
GO:0005759	C	mitochondrial matrix
GO:0008033	P	tRNA processing
GO:0042780	P	tRNA 3'-end processing

O_BomaMSG1000_internal:A_BomaMSG_c4263_g1_i1

116bp

PREDICTED:_probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X3_[Amyelois_transitella]

GO:0004843	F	thiol-dependent deubiquitinase
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0006508	P	proteolysis
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0006897	P	endocytosis
GO:0007275	P	multicellular organism development
GO:0007349	P	cellularization
GO:0007601	P	visual perception
GO:0008233	F	peptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0008354	P	germ cell migration
GO:0008583	P	mystery cell differentiation
GO:0009950	P	dorsal/ventral axis specification
GO:0016579	P	protein deubiquitination
GO:0016787	F	hydrolase activity
GO:0030154	P	cell differentiation
GO:0035192	P	nuclear cortical migration
GO:0036459	F	thiol-dependent deubiquitinase
GO:0045824	P	negative regulation of innate immune response
GO:0045861	P	negative regulation of proteolysis
GO:0048477	P	oogenesis
GO:0050829	P	defense response to Gram-negative bacterium
GO:0050896	P	response to stimulus

O_BomaMSG10010_complete:A_BomaMSG_c21156_g1_i1

274bp

NIPSNAP_protein_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0008150	P	biological_process

O_BomaMSG10011_internal:A_BomaMSG_c21157_g1_i1

287bp

uncharacterized_protein_LOC101745487_[Bombyx_mori]

O_BomaMSG10012_3prime_partial:A_BomaMSG_c21157_g1_i2

338bp

uncharacterized_protein_LOC101745487_[Bombyx_mori]

O_BomaMSG10013_complete:A_BomaMSG_c21159_g1_i2

147bp

mago_nashi_[Bombyx_mori]

GO:0000226	P	microtubule cytoskeleton organization
GO:0000335	P	negative regulation of transposition, DNA-mediated
GO:0000398	P	mRNA splicing, via spliceosome
GO:0003723	F	RNA binding
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006397	P	mRNA processing
GO:0006406	P	mRNA export from nucleus
GO:0006810	P	transport
GO:0007173	P	epidermal growth factor receptor signaling pathway
GO:0007267	P	cell-cell signaling
GO:0007275	P	multicellular organism development
GO:0007309	P	oocyte axis specification
GO:0007315	P	pole plasm assembly
GO:0007317	P	regulation of pole plasm oskar mRNA localization
GO:0007318	P	pole plasm protein localization
GO:0008103	P	oocyte microtubule cytoskeleton polarization
GO:0008104	P	protein localization
GO:0008380	P	RNA splicing
GO:0016325	P	oocyte microtubule cytoskeleton organization
GO:0035145	C	exon-exon junction complex
GO:0045451	P	pole plasm oskar mRNA localization
GO:0045495	C	pole plasm
GO:0046579	P	positive regulation of Ras protein signal transduction
GO:0046594	P	maintenance of pole plasm mRNA location
GO:0048477	P	oogenesis
GO:0051028	P	mRNA transport
GO:0070374	P	positive regulation of ERK1 and ERK2 cascade
GO:0071011	C	precatalytic spliceosome
GO:0071013	C	catalytic step 2 spliceosome

O_BomaMSG10014_complete:A_BomaMSG_c21160_g1_i1

274bp

nucleolar_GTP-binding_protein_2_[Bombyx_mori]

GO:0007155	P	cell adhesion
GO:0007275	P	multicellular organism development
GO:0008360	P	regulation of cell shape
GO:0042127	P	regulation of cell population proliferation
GO:2000270	P	negative regulation of fibroblast apoptotic process

O_BomaMSG10015_internal:A_BomaMSG_c21161_g1_i1

153bp

uncharacterized_protein_C18orf8_[Bombyx_mori]

GO:0005765

lysosomal membrane

O_BomaMSG10016_internal:A_BomaMSG_c21161_g1_i2

267bp

uncharacterized_protein_C18orf8_[Bombyx_mori]

GO:0005765

lysosomal membrane

O_BomaMSG10017_3prime_partial:A_BomaMSG_c21161_g1_i3

261bp

uncharacterized_protein_C18orf8_[Bombyx_mori]

GO:0005765

lysosomal membrane

O_BomaMSG10018_complete:A_BomaMSG_c21162_g1_i1

518bp

zinc_finger_protein_394_isoform_X1_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding

O_BomaMSG10019_complete:A_BomaMSG_c21162_g1_i1

146bp

PREDICTED:_LOW_QUALITY_PROTEIN:_zinc_finger_protein_585A-like,_partial_[Cuculus_canorus]

O_BomaMSG1001_3prime_partial:A_BomaMSG_c4269_g1_i1

117bp

adenosine_deaminase_related_growth_factor_precursor_[Bombyx_mori]

GO:0004000	F	adenosine deaminase activity
GO:0005576	C	extracellular region
GO:0005615	C	extracellular space
GO:0005829	C	cytosol
GO:0006154	P	adenosine catabolic process
GO:0008083	F	growth factor activity
GO:0008201	F	heparin binding
GO:0008270	F	zinc ion binding
GO:0016787	F	hydrolase activity
GO:0019239	F	deaminase activity
GO:0031685	F	adenosine receptor binding
GO:0043103	P	hypoxanthine salvage
GO:0043394	F	proteoglycan binding
GO:0046103	P	inosine biosynthetic process
GO:0046872	F	metal ion binding

O_BomaMSG10020_complete:A_BomaMSG_c21162_g1_i2

694bp

zinc_finger_protein_394_isoform_X1_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding

O_BomaMSG10021_complete:A_BomaMSG_c21162_g1_i2

146bp

PREDICTED:_LOW_QUALITY_PROTEIN:_zinc_finger_protein_585A-like,_partial_[Cuculus_canorus]

O_BomaMSG10022_3prime_partial:A_BomaMSG_c21165_g1_i1

161bp

reticulon-4-interacting_protein_1,_mitochondrial_[Bombyx_mori]

GO:0005739	C	mitochondrion
GO:0008270	F	zinc ion binding
GO:0010842	P	retina layer formation
GO:0016491	F	oxidoreductase activity
GO:0042462	P	eye photoreceptor cell development
GO:0055114	P	obsolete oxidation-reduction process

O_BomaMSG10023_3prime_partial:A_BomaMSG_c21165_g1_i2

161bp

reticulon-4-interacting_protein_1,_mitochondrial_[Bombyx_mori]

GO:0005739	C	mitochondrion
GO:0008270	F	zinc ion binding
GO:0010842	P	retina layer formation
GO:0016491	F	oxidoreductase activity
GO:0042462	P	eye photoreceptor cell development
GO:0055114	P	obsolete oxidation-reduction process