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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
871 A_BomoOtmSK_comp10368_c0_seq2
1320bp
 probable_DNA_replication_complex_GINS_protein_PSF2_[Bombyx_mori]
GO:0000727 P double-strand break repair via break-induced replication
GO:0000811 C GINS complex
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
GO:0031298 C replication fork protection complex
GO:0032508 P DNA duplex unwinding
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0043138 F 3'-5' DNA helicase activity
GO:0046331 P lateral inhibition
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1902975 P mitotic DNA replication initiation
FPKM:1.15 TPM:1.24
872 A_BomoOtmSK_comp1036911_c0_seq1
202bp
FPKM:2.72 TPM:2.94
873 A_BomoOtmSK_comp1036945_c0_seq1
235bp
FPKM:0.74 TPM:0.80
874 A_BomoOtmSK_comp1036991_c0_seq1
329bp
FPKM:0.58 TPM:0.63
875 A_BomoOtmSK_comp10369_c0_seq1
470bp
FPKM:0.00 TPM:0.00
876 A_BomoOtmSK_comp10369_c0_seq2
587bp
FPKM:1.60 TPM:1.73
877 A_BomoOtmSK_comp103700_c0_seq1
723bp
 nuclear_pore_complex_protein_Nup205_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044611 C nuclear pore inner ring
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:5.83 TPM:6.29
878 A_BomoOtmSK_comp1037047_c0_seq1
236bp
 uncharacterized_protein_LOC105843010_isoform_X3_[Bombyx_mori]
FPKM:0.73 TPM:0.78
879 A_BomoOtmSK_comp1037069_c0_seq1
311bp
FPKM:1.00 TPM:1.07
880 A_BomoOtmSK_comp103707_c0_seq1
1538bp
FPKM:2.90 TPM:3.13
881 A_BomoOtmSK_comp1037082_c0_seq1
205bp
 uncharacterized_protein_LOC101736856,_partial_[Bombyx_mori]
FPKM:2.55 TPM:2.74
882 A_BomoOtmSK_comp10370_c0_seq1
1787bp
 protein_msta_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0010629 P negative regulation of gene expression
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0042826 F histone deacetylase binding
FPKM:1.97 TPM:2.12
883 A_BomoOtmSK_comp1037129_c0_seq1
393bp
FPKM:0.61 TPM:0.66
884 A_BomoOtmSK_comp1037190_c0_seq1
227bp
FPKM:0.00 TPM:0.00
885 A_BomoOtmSK_comp1037240_c0_seq1
248bp
FPKM:0.00 TPM:0.00
886 A_BomoOtmSK_comp1037299_c0_seq1
201bp
FPKM:2.79 TPM:3.00
887 A_BomoOtmSK_comp10372_c0_seq1
1893bp
 Hermansky-Pudlak_syndrome_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0006622 P protein targeting to lysosome
GO:0006726 P eye pigment biosynthetic process
GO:0006727 P ommochrome biosynthetic process
GO:0007601 P visual perception
GO:0031084 C BLOC-2 complex
GO:0031409 F pigment binding
GO:0048072 P compound eye pigmentation
GO:0050896 P response to stimulus
GO:0060967 P negative regulation of gene silencing by RNA
FPKM:2.12 TPM:2.29
888 A_BomoOtmSK_comp10372_c1_seq1
1386bp
 Hermansky-Pudlak_syndrome_5_protein_homolog_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006622 P protein targeting to lysosome
GO:0006726 P eye pigment biosynthetic process
GO:0007601 P visual perception
GO:0031409 F pigment binding
GO:0050896 P response to stimulus
FPKM:2.48 TPM:2.67
889 A_BomoOtmSK_comp10372_c2_seq1
247bp
FPKM:0.00 TPM:0.00
890 A_BomoOtmSK_comp1037340_c0_seq1
260bp
 uncharacterized_protein_LOC105842372_isoform_X3_[Bombyx_mori]
FPKM:1.06 TPM:1.15
891 A_BomoOtmSK_comp1037351_c0_seq1
209bp
 uncharacterized_protein_LOC105841413_[Bombyx_mori]
FPKM:0.00 TPM:0.00
892 A_BomoOtmSK_comp1037353_c0_seq1
211bp
FPKM:1.12 TPM:1.21
893 A_BomoOtmSK_comp1037369_c0_seq1
269bp
 uncharacterized_protein_LOC101744658_[Bombyx_mori]
FPKM:0.96 TPM:1.04
894 A_BomoOtmSK_comp10373_c0_seq1
1789bp
FPKM:1.91 TPM:2.06
895 A_BomoOtmSK_comp1037423_c0_seq1
281bp
Uncharacterized_protein_OBRU01_10434_[Operophtera_brumata]
FPKM:1.28 TPM:1.38
896 A_BomoOtmSK_comp10374_c0_seq1
1475bp
FPKM:6.73 TPM:7.25
897 A_BomoOtmSK_comp1037596_c0_seq1
223bp
 uncharacterized_protein_LOC101735730_isoform_X4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0043231 C intracellular membrane-bounded organelle
GO:0045665 P negative regulation of neuron differentiation
GO:0046872 F metal ion binding
GO:0060040 P retinal bipolar neuron differentiation
GO:0060223 P retinal rod cell fate commitment
GO:0060226 P negative regulation of retinal cone cell fate commitment
GO:1902870 P negative regulation of amacrine cell differentiation
FPKM:0.90 TPM:0.97
898 A_BomoOtmSK_comp10375_c0_seq1
286bp
 uncharacterized_protein_LOC105842596_[Bombyx_mori]
FPKM:0.82 TPM:0.88
899 A_BomoOtmSK_comp1037605_c0_seq1
220bp
 uncharacterized_protein_LOC110374959_[Helicoverpa_armigera]
FPKM:1.89 TPM:2.04
900 A_BomoOtmSK_comp1037658_c0_seq1
298bp
FPKM:0.74 TPM:0.79
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