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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
841 A_BomoOtmSK_comp1036130_c0_seq1
257bp
FPKM:1.65 TPM:1.78
842 A_BomoOtmSK_comp103613_c0_seq1
432bp
 LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
FPKM:7.77 TPM:8.37
843 A_BomoOtmSK_comp1036159_c0_seq1
241bp
 sine_oculis-binding_protein_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0032184 F SUMO polymer binding
GO:0042472 P inner ear morphogenesis
GO:0046872 F metal ion binding
GO:0050890 P cognition
GO:0090102 P cochlea development
FPKM:1.35 TPM:1.46
844 A_BomoOtmSK_comp1036240_c0_seq1
265bp
FPKM:0.00 TPM:0.00
845 A_BomoOtmSK_comp1036252_c0_seq1
295bp
 C-Maf-inducing_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
FPKM:1.13 TPM:1.22
846 A_BomoOtmSK_comp1036285_c0_seq1
265bp
FPKM:1.51 TPM:1.63
847 A_BomoOtmSK_comp1036299_c0_seq1
217bp
FPKM:2.00 TPM:2.15
848 A_BomoOtmSK_comp10362_c0_seq1
1531bp
 inositol-trisphosphate_3-kinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006020 P inositol metabolic process
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0043197 C dendritic spine
GO:0043647 P inositol phosphate metabolic process
GO:0048167 P regulation of synaptic plasticity
GO:0048365 F small GTPase binding
GO:0061003 P positive regulation of dendritic spine morphogenesis
GO:0097062 P dendritic spine maintenance
FPKM:17.20 TPM:18.55
849 A_BomoOtmSK_comp10362_c0_seq2
1562bp
 inositol-trisphosphate_3-kinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006020 P inositol metabolic process
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0043197 C dendritic spine
GO:0043647 P inositol phosphate metabolic process
GO:0048167 P regulation of synaptic plasticity
GO:0048365 F small GTPase binding
GO:0061003 P positive regulation of dendritic spine morphogenesis
GO:0097062 P dendritic spine maintenance
FPKM:6.03 TPM:6.50
850 A_BomoOtmSK_comp1036358_c0_seq1
202bp
 PREDICTED:_synaptotagmin_1_isoform_X1_[Amyelois_transitella]
GO:0000149 F SNARE binding
GO:0001786 F phosphatidylserine binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006887 P exocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0008021 C synaptic vesicle
GO:0008345 P larval locomotory behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016192 P vesicle-mediated transport
GO:0017158 P regulation of calcium ion-dependent exocytosis
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0030276 F clathrin binding
GO:0030285 C integral component of synaptic vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031340 P positive regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0031594 C neuromuscular junction
GO:0042803 F protein homodimerization activity
GO:0043195 C terminal bouton
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:0048791 P calcium ion-regulated exocytosis of neurotransmitter
GO:0050803 P regulation of synapse structure or activity
GO:0060024 P rhythmic synaptic transmission
GO:1900073 P regulation of neuromuscular synaptic transmission
FPKM:1.36 TPM:1.47
851 A_BomoOtmSK_comp10363_c0_seq1
882bp
 uncharacterized_protein_LOC110385512,_partial_[Bombyx_mori]
FPKM:1.36 TPM:1.46
852 A_BomoOtmSK_comp10363_c1_seq1
255bp
 reverse_transcriptase,_partial_[Bombyx_mori]
FPKM:3.39 TPM:3.65
853 A_BomoOtmSK_comp10364_c0_seq1
613bp
FPKM:2.23 TPM:2.41
854 A_BomoOtmSK_comp1036559_c0_seq1
241bp
FPKM:0.00 TPM:0.00
855 A_BomoOtmSK_comp1036566_c0_seq1
286bp
 uncharacterized_protein_LOC101743313_[Bombyx_mori]
FPKM:1.22 TPM:1.32
856 A_BomoOtmSK_comp1036584_c0_seq1
318bp
FPKM:0.95 TPM:1.02
857 A_BomoOtmSK_comp10365_c0_seq1
311bp
FPKM:1.66 TPM:1.79
858 A_BomoOtmSK_comp1036605_c0_seq1
208bp
FPKM:2.39 TPM:2.57
859 A_BomoOtmSK_comp1036681_c0_seq1
214bp
FPKM:2.11 TPM:2.28
860 A_BomoOtmSK_comp1036688_c0_seq1
227bp
FPKM:0.84 TPM:0.90
861 A_BomoOtmSK_comp103668_c0_seq1
1450bp
 receptor-mediated_endocytosis_protein_6_homolog_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0032794 F GTPase activating protein binding
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0051223 P regulation of protein transport
FPKM:3.85 TPM:4.15
862 A_BomoOtmSK_comp10366_c0_seq1
575bp
FPKM:10.33 TPM:11.14
863 A_BomoOtmSK_comp10366_c1_seq1
513bp
FPKM:4.57 TPM:4.92
864 A_BomoOtmSK_comp1036723_c0_seq1
217bp
FPKM:2.00 TPM:2.15
865 A_BomoOtmSK_comp1036793_c0_seq1
213bp
FPKM:2.16 TPM:2.32
866 A_BomoOtmSK_comp10367_c0_seq1
672bp
FPKM:2.38 TPM:2.57
867 A_BomoOtmSK_comp10367_c1_seq1
296bp
FPKM:3.74 TPM:4.03
868 A_BomoOtmSK_comp103680_c0_seq1
387bp
 hypothetical_protein_NBO_272g0001_[Nosema_bombycis_CQ1]
FPKM:0.42 TPM:0.45
869 A_BomoOtmSK_comp1036897_c0_seq1
209bp
FPKM:2.34 TPM:2.52
870 A_BomoOtmSK_comp10368_c0_seq1
877bp
 probable_DNA_replication_complex_GINS_protein_PSF2_[Bombyx_mori]
GO:0000727 P double-strand break repair via break-induced replication
GO:0000811 C GINS complex
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
GO:0031298 C replication fork protection complex
GO:0032508 P DNA duplex unwinding
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0043138 F 3'-5' DNA helicase activity
GO:0046331 P lateral inhibition
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1902975 P mitotic DNA replication initiation
FPKM:10.05 TPM:10.84
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