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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
781 A_BomoOtmSK_comp1034884_c0_seq1
310bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.67 TPM:0.72
782 A_BomoOtmSK_comp10348_c0_seq1
2143bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
FPKM:9.40 TPM:10.13
783 A_BomoOtmSK_comp1034904_c0_seq1
238bp
 hypothetical_protein_[Bombyx_mori]
FPKM:1.41 TPM:1.52
784 A_BomoOtmSK_comp1034905_c0_seq1
201bp
FPKM:1.39 TPM:1.50
785 A_BomoOtmSK_comp103490_c0_seq1
830bp
 AT-rich_interactive_domain-containing_protein_5B_isoform_X4_[Bombyx_mori]
FPKM:4.07 TPM:4.39
786 A_BomoOtmSK_comp1034918_c0_seq1
213bp
FPKM:2.16 TPM:2.32
787 A_BomoOtmSK_comp1034959_c0_seq1
319bp
FPKM:0.63 TPM:0.67
788 A_BomoOtmSK_comp1034968_c0_seq1
279bp
FPKM:1.31 TPM:1.41
789 A_BomoOtmSK_comp10349_c0_seq1
329bp
FPKM:3.80 TPM:4.09
790 A_BomoOtmSK_comp1034_c0_seq1
254bp
FPKM:1.71 TPM:1.85
791 A_BomoOtmSK_comp103500_c0_seq1
1610bp
 RNA-binding_protein_28_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
FPKM:4.66 TPM:5.03
792 A_BomoOtmSK_comp1035117_c0_seq1
310bp
 sodium_channel_protein_Nach_[Bombyx_mori]
FPKM:0.67 TPM:0.72
793 A_BomoOtmSK_comp103512_c0_seq1
1430bp
 retinoid-inducible_serine_carboxypeptidase-like_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0042573 P retinoic acid metabolic process
GO:0045776 P negative regulation of blood pressure
GO:0045909 P vasodilation
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0070062 C extracellular exosome
FPKM:2.95 TPM:3.18
794 A_BomoOtmSK_comp1035163_c0_seq1
306bp
 myrosinase_1_[Bombyx_mori]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0008422 F beta-glucosidase activity
GO:0009507 C chloroplast
GO:0009536 C plastid
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:1.03 TPM:1.12
795 A_BomoOtmSK_comp1035174_c0_seq1
223bp
FPKM:2.69 TPM:2.90
796 A_BomoOtmSK_comp10351_c0_seq1
475bp
 lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor-like_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:14.43 TPM:15.56
797 A_BomoOtmSK_comp1035207_c0_seq1
312bp
FPKM:0.66 TPM:0.71
798 A_BomoOtmSK_comp1035221_c0_seq1
251bp
FPKM:1.78 TPM:1.92
799 A_BomoOtmSK_comp1035222_c0_seq1
223bp
FPKM:1.79 TPM:1.93
800 A_BomoOtmSK_comp103525_c0_seq1
443bp
FPKM:4.13 TPM:4.46
801 A_BomoOtmSK_comp1035264_c0_seq1
213bp
 hypothetical_protein_RR46_04348_[Papilio_xuthus]
FPKM:2.16 TPM:2.32
802 A_BomoOtmSK_comp10352_c0_seq1
1426bp
 polycomb_protein_suz12-B_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001739 C sex chromatin
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008284 P positive regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016574 P histone ubiquitination
GO:0031490 F chromatin DNA binding
GO:0032993 C protein-DNA complex
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0042054 F histone methyltransferase activity
GO:0043565 F sequence-specific DNA binding
GO:0045596 P negative regulation of cell differentiation
GO:0046872 F metal ion binding
FPKM:2.71 TPM:2.92
803 A_BomoOtmSK_comp1035349_c0_seq1
297bp
FPKM:1.11 TPM:1.20
804 A_BomoOtmSK_comp10353_c0_seq1
4683bp
 protein_Skeletor,_isoforms_D/E_isoform_X1_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:3.95 TPM:4.26
805 A_BomoOtmSK_comp10353_c0_seq2
4778bp
 protein_Skeletor,_isoforms_D/E_isoform_X1_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:18.37 TPM:19.81
806 A_BomoOtmSK_comp10353_c0_seq3
2871bp
 protein_Skeletor,_isoforms_D/E_isoform_X1_[Bombyx_mori]
GO:0004500 F dopamine beta-monooxygenase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006584 P catecholamine metabolic process
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
FPKM:26.22 TPM:28.26
807 A_BomoOtmSK_comp10354_c0_seq1
571bp
FPKM:3.11 TPM:3.35
808 A_BomoOtmSK_comp1035503_c0_seq1
239bp
FPKM:0.70 TPM:0.75
809 A_BomoOtmSK_comp1035559_c0_seq1
243bp
FPKM:0.66 TPM:0.71
810 A_BomoOtmSK_comp1035568_c0_seq1
251bp
FPKM:1.19 TPM:1.28
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