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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1291 A_BomoOtmSK_comp1046144_c0_seq1
226bp
FPKM:0.85 TPM:0.92
1292 A_BomoOtmSK_comp104614_c0_seq1
3080bp
 ribonuclease_3_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0070878 F primary miRNA binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
FPKM:3.64 TPM:3.93
1293 A_BomoOtmSK_comp1046157_c0_seq1
356bp
 reverse_transcriptase_[Lasius_niger]
FPKM:0.25 TPM:0.27
1294 A_BomoOtmSK_comp1046184_c0_seq1
243bp
FPKM:0.66 TPM:0.71
1295 A_BomoOtmSK_comp1046185_c0_seq1
258bp
 retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Danaus_plexippus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.09 TPM:1.17
1296 A_BomoOtmSK_comp1046186_c0_seq1
385bp
FPKM:0.42 TPM:0.46
1297 A_BomoOtmSK_comp10461_c0_seq1
1570bp
 protein_Spindly_[Bombyx_mori]
FPKM:5.95 TPM:6.42
1298 A_BomoOtmSK_comp1046221_c0_seq1
224bp
FPKM:1.76 TPM:1.90
1299 A_BomoOtmSK_comp1046246_c0_seq1
283bp
FPKM:1.26 TPM:1.36
1300 A_BomoOtmSK_comp1046268_c0_seq1
305bp
FPKM:0.69 TPM:0.75
1301 A_BomoOtmSK_comp1046316_c0_seq1
346bp
FPKM:1.05 TPM:1.13
1302 A_BomoOtmSK_comp10463_c0_seq1
1275bp
 UDP-xylose_and_UDP-N-acetylglucosamine_transporter_[Bombyx_mori]
GO:0005456 F CMP-N-acetylneuraminate transmembrane transporter activity
GO:0005457 F GDP-fucose transmembrane transporter activity
GO:0005458 F GDP-mannose transmembrane transporter activity
GO:0005460 F UDP-glucose transmembrane transporter activity
GO:0005461 F UDP-glucuronic acid transmembrane transporter activity
GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity
GO:0005464 F UDP-xylose transmembrane transporter activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0015782 P CMP-N-acetylneuraminate transmembrane transport
GO:0015783 P GDP-fucose transmembrane transport
GO:0015784 P GDP-mannose transmembrane transport
GO:0015786 P UDP-glucose transmembrane transport
GO:0015787 P UDP-glucuronic acid transmembrane transport
GO:0015788 P UDP-N-acetylglucosamine transmembrane transport
GO:0015790 P UDP-xylose transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030173 C integral component of Golgi membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0036066 P protein O-linked fucosylation
GO:0036084 P GDP-fucose import into endoplasmic reticulum lumen
GO:0055085 P transmembrane transport
GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
FPKM:6.29 TPM:6.78
1303 A_BomoOtmSK_comp1046431_c0_seq1
221bp
FPKM:1.86 TPM:2.00
1304 A_BomoOtmSK_comp1046449_c0_seq1
231bp
FPKM:0.79 TPM:0.85
1305 A_BomoOtmSK_comp104654_c0_seq1
485bp
 PREDICTED:_uncharacterized_protein_LOC106709836_[Papilio_machaon]
FPKM:4.84 TPM:5.22
1306 A_BomoOtmSK_comp10465_c0_seq1
249bp
FPKM:2.43 TPM:2.62
1307 A_BomoOtmSK_comp1046624_c0_seq1
309bp
FPKM:0.34 TPM:0.36
1308 A_BomoOtmSK_comp1046630_c0_seq1
369bp
FPKM:0.92 TPM:0.99
1309 A_BomoOtmSK_comp1046655_c0_seq1
385bp
FPKM:0.64 TPM:0.69
1310 A_BomoOtmSK_comp1046659_c0_seq1
282bp
FPKM:0.85 TPM:0.91
1311 A_BomoOtmSK_comp104665_c0_seq1
237bp
FPKM:1.43 TPM:1.55
1312 A_BomoOtmSK_comp1046668_c0_seq1
228bp
FPKM:1.65 TPM:1.78
1313 A_BomoOtmSK_comp1046683_c0_seq1
221bp
 pregnancy_zone_protein_[Bombyx_mori]
FPKM:2.78 TPM:3.00
1314 A_BomoOtmSK_comp10466_c0_seq1
844bp
FPKM:3.76 TPM:4.06
1315 A_BomoOtmSK_comp1046713_c0_seq1
214bp
FPKM:2.11 TPM:2.28
1316 A_BomoOtmSK_comp1046725_c0_seq1
206bp
FPKM:2.49 TPM:2.69
1317 A_BomoOtmSK_comp1046731_c0_seq1
240bp
FPKM:2.06 TPM:2.22
1318 A_BomoOtmSK_comp1046751_c0_seq1
220bp
FPKM:1.89 TPM:2.04
1319 A_BomoOtmSK_comp1046764_c0_seq1
206bp
FPKM:1.25 TPM:1.34
1320 A_BomoOtmSK_comp1046772_c0_seq1
360bp
FPKM:0.73 TPM:0.78
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