SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47999
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1321 A_BomoOtmSK_comp1046796_c0_seq1
293bp
FPKM:1.53 TPM:1.65
1322 A_BomoOtmSK_comp10467_c0_seq1
421bp
 uncharacterized_protein_LOC101745679,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0007029 P endoplasmic reticulum organization
GO:0007031 P peroxisome organization
GO:0010628 P positive regulation of gene expression
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016559 P peroxisome fission
GO:0043231 C intracellular membrane-bounded organelle
GO:0048208 P COPII vesicle coating
GO:0070863 P positive regulation of protein exit from endoplasmic reticulum
GO:0070972 P protein localization to endoplasmic reticulum
FPKM:7.40 TPM:7.98
1323 A_BomoOtmSK_comp10467_c0_seq2
382bp
FPKM:1.29 TPM:1.39
1324 A_BomoOtmSK_comp1046820_c0_seq1
265bp
FPKM:1.01 TPM:1.08
1325 A_BomoOtmSK_comp1046828_c0_seq1
220bp
 sodium/hydrogen_exchanger_9B2_isoform_X2_[Bombyx_mori]
FPKM:1.89 TPM:2.04
1326 A_BomoOtmSK_comp1046865_c0_seq1
247bp
FPKM:0.00 TPM:0.00
1327 A_BomoOtmSK_comp1046886_c0_seq1
204bp
FPKM:2.60 TPM:2.81
1328 A_BomoOtmSK_comp10468_c0_seq1
2173bp
 proton-coupled_folate_transporter_[Bombyx_mori]
GO:0005542 F folic acid binding
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:33.74 TPM:36.38
1329 A_BomoOtmSK_comp104698_c0_seq1
339bp
FPKM:4.93 TPM:5.31
1330 A_BomoOtmSK_comp10469_c0_seq1
1297bp
 nucleoplasmin_isoform_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006338 P chromatin remodeling
GO:0016584 P nucleosome positioning
GO:0035041 P sperm DNA decondensation
GO:0042393 F histone binding
GO:0042623 F ATP hydrolysis activity
FPKM:41.18 TPM:44.40
1331 A_BomoOtmSK_comp10469_c0_seq2
1249bp
 nucleoplasmin_isoform_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006338 P chromatin remodeling
GO:0016584 P nucleosome positioning
GO:0035041 P sperm DNA decondensation
GO:0042393 F histone binding
GO:0042623 F ATP hydrolysis activity
FPKM:78.82 TPM:84.98
1332 A_BomoOtmSK_comp1046_c0_seq1
337bp
FPKM:1.66 TPM:1.79
1333 A_BomoOtmSK_comp1047017_c0_seq1
237bp
FPKM:0.72 TPM:0.77
1334 A_BomoOtmSK_comp10470_c0_seq1
511bp
FPKM:1.05 TPM:1.13
1335 A_BomoOtmSK_comp10470_c1_seq1
1069bp
 PREDICTED:_uncharacterized_protein_LOC105380399_[Plutella_xylostella]
FPKM:3.80 TPM:4.10
1336 A_BomoOtmSK_comp1047129_c0_seq1
272bp
FPKM:0.00 TPM:0.00
1337 A_BomoOtmSK_comp1047156_c0_seq1
212bp
FPKM:2.20 TPM:2.37
1338 A_BomoOtmSK_comp1047171_c0_seq1
287bp
FPKM:0.81 TPM:0.87
1339 A_BomoOtmSK_comp1047174_c0_seq1
338bp
FPKM:0.55 TPM:0.59
1340 A_BomoOtmSK_comp1047184_c0_seq1
352bp
 tyrosine-protein_kinase_transmembrane_receptor_Ror_isoform_X3_[Bombyx_mori]
FPKM:0.76 TPM:0.82
1341 A_BomoOtmSK_comp10471_c0_seq1
2289bp
 uncharacterized_protein_LOC110373630_[Helicoverpa_armigera]
FPKM:3.06 TPM:3.30
1342 A_BomoOtmSK_comp1047252_c0_seq1
247bp
 LOW_QUALITY_PROTEIN:_dynein_heavy_chain_8,_axonemal_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003341 P cilium movement
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005858 C axonemal dynein complex
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007018 P microtubule-based movement
GO:0007368 P determination of left/right symmetry
GO:0007507 P heart development
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0021670 P lateral ventricle development
GO:0030286 C dynein complex
GO:0030317 P flagellated sperm motility
GO:0036157 C outer dynein arm
GO:0036158 P outer dynein arm assembly
GO:0042384 P cilium assembly
GO:0042995 C cell projection
FPKM:0.62 TPM:0.67
1343 A_BomoOtmSK_comp1047285_c0_seq1
264bp
 Gag-Pol_polyprotein_[Operophtera_brumata]
FPKM:1.53 TPM:1.65
1344 A_BomoOtmSK_comp10472_c0_seq1
206bp
 serine_protease_persephone_[Bombyx_mori]
FPKM:7.47 TPM:8.06
1345 A_BomoOtmSK_comp1047361_c0_seq1
250bp
FPKM:0.60 TPM:0.65
1346 A_BomoOtmSK_comp1047367_c0_seq1
242bp
FPKM:1.34 TPM:1.44
1347 A_BomoOtmSK_comp10473_c0_seq1
3132bp
 uncharacterized_protein_LOC101742777_[Bombyx_mori]
FPKM:3.69 TPM:3.98
1348 A_BomoOtmSK_comp10474_c0_seq1
263bp
 PREDICTED:_uncharacterized_protein_LOC105118166_[Populus_euphratica]
FPKM:2.57 TPM:2.77
1349 A_BomoOtmSK_comp10474_c1_seq1
402bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:0.59 TPM:0.63
1350 A_BomoOtmSK_comp1047519_c0_seq1
239bp
FPKM:0.70 TPM:0.75
previous next from show/47999

- SilkBase 1999-2023 -