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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp104614_c0_seq1
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		ribonuclease_3_[Bombyx_mori]
Ontology
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0070878 F primary miRNA binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
Transcript
Level		FPKM:3.64 TPM:3.93
ORF EntryO_BomoOtmSK31396_complete:A_BomoOtmSK_comp104614_c0_seq1
Sequence
(Nucleotide)
ATTCAATACTCTTGGATTTATCTTTCAACATTTGGATTGAATATGTATACGGAAGTAATT
CATCATTATTCACGTTAAAGTTTCTTAATTAAAAAAAAAACTGTATGTGTCGATAAGCAG
TAAAACATTTCAGTATGTCTATTCCTCCAGTTGATTACAGTGTTCCACCTCCGCCAATTC
CGAGGCTTCCAGTTAATATTCCGTTACCACCCCACCCACCCCCGCCTATCTTTCCGAGAG
CAATGCCTTTATATACCAGACCGCCACCAGTACTTCCGATGCTATCAGTACCGCCAGTAC
CATACCCTCATTCACGCATGCCTCCAGCTCCTGTTCCACAGTTACCTGTACCCAACTTTA
TGCCCACCATTGATATACATTCTGTCCCTCCACCACATCCAGTATCTTCCTACCAAGCAT
CCAAATCGCACAGAGATACTAATGATTATCTACCGTGGAATTACAAAACATCCAATAGCT
TGAGTAATACGAGTTCTGGTATAACTAGAATAGATCATGGTTTGTGTGGTACAACATATA
AAAAAAAAGAAATCTATCGAAATTCGAGAGAACCATCAAGACATAGCTATTCTCCCCAAA
GAGGGCATTCTCCTTTTAGGGGACAGTCCCCTCACATAGGACATTCTCCACATGGATATT
CTGATAGGAGCAGGAGGGAGAGGGATAGAGATAGAGAACAGAGGAATCCGACAAGTCATA
GTCCTAGATATTGCTCTAGAAGTCCACCAAGATACAGTTCAAAATTAAACAGAAGTCCTT
CTCGATATAGCTATAGAGAAAGAGAGAAAGAAAGATATTACATGGAGAGAGAGAAAAAGT
ATTATGAAGGAAGACGAGAATATGGTAGAAGAAAATATGAATATGATGTTCGCCGCAGTG
AATCTCAATACAAAGATTATAGAAGCCACAGTAGATGTGAAGGTAGGGATAGATCACCAA
GCAGAAGGGCGCATTCTCCTAGTAGGGAGTCCAATAGAGAAAGTCTGACGAGAGAAATGT
CACTTCACCGACAAGAATCACTTTTAGGCAAACCAATGACAGATCGTGAAAAGATTTTGG
AAGAATATAGGAAAAACTACTGTAGAACTTCTGAAGATTTTATACAGAAAATGGAACAGT
GGTCGAAAGAACATCTTTCTGAAGGAGAAGAGTCGTCAATGTGGTATAGGAGTTCACCAG
CTGAGCTCTATTACAAAGAAGTCCAAAATGGTGAGGGAGTCGAACAAACTTTAAAACTGC
AGAAACTTTGTGAAGTATTCATGAAGAAACTCATTGAGAGGGGACGTAATGCAAGGCCTG
AGGTTGATGAGCTCCCACCCTTAAAGCCACCTAAATCGAAAATGTGCAAACATAAACTTG
ATGAAAAAAGCTCATCGTCGTCATCATCGTCATCATCATCAGAAAGTGACGGATGTTTAG
ATGAAGAGGGCTTGCAGGGCTATAGTGATAGGATAATGCTAGAGCTACAGCGGAAACAGA
GTCATCCCAGGAGATTGCACCCTGAAATGTGGTTTAACAACACCGGCGAAATGAACGGCG
GTCCGTTGTGTCGGTGTAGCGCCCGAGCCCGTCGTCACGGCATGCGGCACGGCGTCTACG
CCGGCGAGGAATCATTCCCGAAATGTATTCCTGAACGAAGCAATATCGACAAACTGTATC
ATTATCGTATAACCGTGTCGCCTCCTACAAACTTTTTAATCAAAGCACCAACGATCATAG
CTCACGACGAACACGAATTTCTATTTTCTGGCTTCTCATTGTTCTCGCACTACAAACTTG
CCAAGTTGCCCATGTGCAAAGTCATAAGGTTCAATATTGAATACACAATTCTATATGTGG
AAGAACCGGCACCAAGAAATTTTACCATACAAGAATTAAGTCTATTCGAGGAATTCCTAT
TTACGGAGTTACTAGAGTTGATTGATTTGGACCTGGGAAAAGCCACGGATACAACATGTT
CACAATTCCATTTTATGCCTCGATTTGTAAGATTTTTACCTGAAGGAGGATGTGAGGTAC
TCTCAATGTGTGAAGTTATAAAGTATTTGATTGACGAAAGTGGTTTACTGATACCGATGG
AAAAGTTGAGTGACGTACATGAAATGGATCACTACACCTGGCAAAAGTTTGTTGATAAAA
TCAAAGGTATGATAGTGACTTACCCCGGTAAGAAGCCGTGCTCGGTGCGCGTGGACCAGC
TCGACCGAAGTCCGCCGACGGGCTCCGAAGCCGTTAAGAACCCTAAAGCATTGAAGAAAT
ACTTCCCTGAAATCGTACACTTTGGTATACGTCCGCCGCAGCTCAGTTACGCTGGCAACC
CCGAGTATCAAAAAGCATGGCGTTATTACGTTAAATACCGCCATTTAATAGCGAATATGG
CGAAGACTTCTTATAAGGAGAGACAGAAATTAGCCGCTAAAGAGGCTAAGCTGCAAGAGA
TGCGCACTCAGTCTAAAATGAAAAGGGACGTGACTGTTGCTATATCGTCGGAAGGGTTCC
ACACTACCGGACTCATGTGTGACGTCGTGCAGCACGCGATGTTAATACCGGTGTTGGTGC
GTCACCTCCGGTTCCACAAGTCGCTCGAAAAACTCGAGAAGAAAATCGGTTATGTTTTTA
AGCAACGAGCATTGCTCCAGACTGCATTAACTCATCCATCGTATAGAGAAAACTTTGGTA
CCAACCCTGACCACGCCAGGAACAGTCTCACTAACTGCGGTATACGACAACCGGAGTACG
GGGACCGAAGAATACATTATACAAGAAAGAAGGGCATAGTAACACTTATCAAAATAATGT
CCAGTTTCGGGAAAATCAGTGAGACAGAATCAGAAATTAAGCACAACGAACGTTTGGAAT
TTTTGGGAGATGCTGTAGTGGAATTCTTGTCTTCGATTCATCTTTTTAAGATGTTTCCTG
GGCTGGCAGAAGGAGGCCTGGCTACGTACAGAGCTGCCATTGTACAGAATCAACATTTAG
CGCAACTTGCTAAGGTATCATTTGGTGATCATTTATGTAACGTAATAGTTAAAAATCGGC
CAAACCAAAATTCATTCAAA
(3080 bp)

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