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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1051 A_BomoOtmSK_comp10408_c0_seq2
530bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:1.24 TPM:1.34
1052 A_BomoOtmSK_comp10408_c0_seq3
408bp
 polyprotein,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1053 A_BomoOtmSK_comp10408_c0_seq4
228bp
 hypothetical_protein,_partial_[Acinetobacter_baumannii]
FPKM:3.29 TPM:3.55
1054 A_BomoOtmSK_comp1040955_c0_seq1
257bp
FPKM:1.10 TPM:1.19
1055 A_BomoOtmSK_comp104096_c0_seq1
593bp
FPKM:5.36 TPM:5.78
1056 A_BomoOtmSK_comp1040982_c0_seq1
257bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:1.10 TPM:1.19
1057 A_BomoOtmSK_comp1040993_c0_seq1
344bp
 Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:0.80 TPM:0.86
1058 A_BomoOtmSK_comp1040_c0_seq1
207bp
FPKM:0.00 TPM:0.00
1059 A_BomoOtmSK_comp1041008_c0_seq1
238bp
 venom_carboxylesterase-6_[Bombyx_mori]
FPKM:1.41 TPM:1.52
1060 A_BomoOtmSK_comp1041027_c0_seq1
212bp
FPKM:1.10 TPM:1.19
1061 A_BomoOtmSK_comp1041028_c0_seq1
230bp
FPKM:0.80 TPM:0.86
1062 A_BomoOtmSK_comp1041092_c0_seq1
330bp
 ATP-binding_cassette_sub-family_A_member_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005774 C vacuolar membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:0.87 TPM:0.94
1063 A_BomoOtmSK_comp10410_c0_seq1
1055bp
FPKM:11.89 TPM:12.82
1064 A_BomoOtmSK_comp1041138_c0_seq1
275bp
 heat_shock_protein_70_A1,_partial_[Spodoptera_frugiperda]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0009408 P response to heat
FPKM:0.91 TPM:0.98
1065 A_BomoOtmSK_comp10411_c0_seq1
1679bp
 LOW_QUALITY_PROTEIN:_protein_FAM135A_[Bombyx_mori]
GO:0044255 P cellular lipid metabolic process
GO:0052689 F carboxylic ester hydrolase activity
FPKM:1.65 TPM:1.78
1066 A_BomoOtmSK_comp1041200_c0_seq1
221bp
 LOW_QUALITY_PROTEIN:_protein_piccolo_[Bombyx_mori]
FPKM:2.78 TPM:3.00
1067 A_BomoOtmSK_comp1041218_c0_seq1
229bp
FPKM:0.81 TPM:0.87
1068 A_BomoOtmSK_comp1041263_c0_seq1
346bp
FPKM:0.79 TPM:0.85
1069 A_BomoOtmSK_comp10412_c0_seq1
535bp
 toll-like_receptor_7_[Bombyx_mori]
GO:0004864 F protein phosphatase inhibitor activity
GO:0005615 C extracellular space
GO:0010923 P negative regulation of phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019902 F phosphatase binding
FPKM:1.10 TPM:1.19
1070 A_BomoOtmSK_comp10412_c1_seq1
265bp
 toll-like_receptor_7_[Bombyx_mori]
GO:0001657 P ureteric bud development
GO:0001933 P negative regulation of protein phosphorylation
GO:0002042 P cell migration involved in sprouting angiogenesis
GO:0002689 P negative regulation of leukocyte chemotaxis
GO:0005095 F GTPase inhibitor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006935 P chemotaxis
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007420 P brain development
GO:0008045 P motor neuron axon guidance
GO:0008201 F heparin binding
GO:0009986 C cell surface
GO:0010593 P negative regulation of lamellipodium assembly
GO:0010596 P negative regulation of endothelial cell migration
GO:0014912 P negative regulation of smooth muscle cell migration
GO:0016020 C membrane
GO:0021510 P spinal cord development
GO:0021834 P chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration
GO:0021836 P chemorepulsion involved in postnatal olfactory bulb interneuron migration
GO:0021972 P corticospinal neuron axon guidance through spinal cord
GO:0030154 P cell differentiation
GO:0030308 P negative regulation of cell growth
GO:0030336 P negative regulation of cell migration
GO:0030837 P negative regulation of actin filament polymerization
GO:0031290 P retinal ganglion cell axon guidance
GO:0031667 P response to nutrient levels
GO:0032870 P cellular response to hormone stimulus
GO:0034260 P negative regulation of GTPase activity
GO:0035385 P Roundabout signaling pathway
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0043116 P negative regulation of vascular permeability
GO:0043237 F laminin-1 binding
GO:0043394 F proteoglycan binding
GO:0043395 F heparan sulfate proteoglycan binding
GO:0048495 F Roundabout binding
GO:0048754 P branching morphogenesis of an epithelial tube
GO:0048846 P axon extension involved in axon guidance
GO:0050728 P negative regulation of inflammatory response
GO:0050772 P positive regulation of axonogenesis
GO:0050919 P negative chemotaxis
GO:0050929 P induction of negative chemotaxis
GO:0051058 P negative regulation of small GTPase mediated signal transduction
GO:0051414 P response to cortisol
GO:0061364 P apoptotic process involved in luteolysis
GO:0070062 C extracellular exosome
GO:0070100 P negative regulation of chemokine-mediated signaling pathway
GO:0071504 P cellular response to heparin
GO:0071672 P negative regulation of smooth muscle cell chemotaxis
GO:0071676 P negative regulation of mononuclear cell migration
GO:0090024 P negative regulation of neutrophil chemotaxis
GO:0090027 P negative regulation of monocyte chemotaxis
GO:0090260 P negative regulation of retinal ganglion cell axon guidance
GO:0090288 P negative regulation of cellular response to growth factor stimulus
FPKM:1.01 TPM:1.08
1071 A_BomoOtmSK_comp1041322_c0_seq1
376bp
FPKM:0.89 TPM:0.96
1072 A_BomoOtmSK_comp1041352_c0_seq1
281bp
FPKM:0.85 TPM:0.92
1073 A_BomoOtmSK_comp1041383_c0_seq1
304bp
FPKM:0.70 TPM:0.76
1074 A_BomoOtmSK_comp1041393_c0_seq1
314bp
FPKM:0.65 TPM:0.70
1075 A_BomoOtmSK_comp10413_c0_seq1
394bp
FPKM:2.44 TPM:2.63
1076 A_BomoOtmSK_comp10414_c0_seq1
412bp
FPKM:1.69 TPM:1.82
1077 A_BomoOtmSK_comp10414_c1_seq1
717bp
FPKM:1.21 TPM:1.31
1078 A_BomoOtmSK_comp1041520_c0_seq1
228bp
 uncharacterized_protein_LOC110385835_[Bombyx_mori]
FPKM:0.82 TPM:0.89
1079 A_BomoOtmSK_comp1041521_c0_seq1
286bp
 LOW_QUALITY_PROTEIN:_protein_CLEC16A_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1080 A_BomoOtmSK_comp1041526_c0_seq1
203bp
FPKM:1.33 TPM:1.43
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