SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47999
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1021 A_BomoOtmSK_comp10402_c0_seq1
854bp
 TM2_domain-containing_protein_almondex_[Bombyx_mori]
GO:0001713 P ectodermal cell fate determination
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007219 P Notch signaling pathway
GO:0007220 P Notch receptor processing
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007498 P mesoderm development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0044214 C spanning component of plasma membrane
GO:0045747 P positive regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
FPKM:9.65 TPM:10.40
1022 A_BomoOtmSK_comp1040329_c0_seq1
286bp
FPKM:0.82 TPM:0.88
1023 A_BomoOtmSK_comp1040337_c0_seq1
230bp
FPKM:1.60 TPM:1.72
1024 A_BomoOtmSK_comp1040340_c0_seq1
207bp
 dynein_heavy_chain_7,_axonemal_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001539 P cilium or flagellum-dependent cell motility
GO:0003341 P cilium movement
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005509 F calcium ion binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005858 C axonemal dynein complex
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007018 P microtubule-based movement
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0030286 C dynein complex
GO:0036156 C inner dynein arm
GO:0036159 P inner dynein arm assembly
GO:0042995 C cell projection
FPKM:2.44 TPM:2.63
1025 A_BomoOtmSK_comp1040376_c0_seq1
247bp
FPKM:1.25 TPM:1.35
1026 A_BomoOtmSK_comp1040385_c0_seq1
381bp
FPKM:0.65 TPM:0.70
1027 A_BomoOtmSK_comp1040398_c0_seq1
208bp
FPKM:1.19 TPM:1.29
1028 A_BomoOtmSK_comp10403_c0_seq1
1109bp
 dehydrogenase/reductase_SDR_family_protein_7-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:14.41 TPM:15.54
1029 A_BomoOtmSK_comp1040487_c0_seq1
248bp
 aminopeptidase_N_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005576 C extracellular region
GO:0005618 C cell wall
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:1.85 TPM:1.99
1030 A_BomoOtmSK_comp1040492_c0_seq1
295bp
FPKM:0.75 TPM:0.81
1031 A_BomoOtmSK_comp10404_c0_seq1
1003bp
 calcyphosphine_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:20.13 TPM:21.71
1032 A_BomoOtmSK_comp10404_c0_seq2
1050bp
 calcyphosphine_isoform_2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:27.38 TPM:29.52
1033 A_BomoOtmSK_comp1040503_c0_seq1
247bp
FPKM:1.87 TPM:2.02
1034 A_BomoOtmSK_comp1040557_c0_seq1
241bp
 type_I_inositol_1,4,5-trisphosphate_5-phosphatase_isoform_X2_[Bombyx_mori]
GO:0004445 F inositol-polyphosphate 5-phosphatase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity
GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity
FPKM:2.03 TPM:2.19
1035 A_BomoOtmSK_comp1040569_c0_seq1
282bp
FPKM:1.27 TPM:1.37
1036 A_BomoOtmSK_comp10405_c0_seq1
1784bp
 cell_division_cycle_5-like_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
FPKM:11.42 TPM:12.31
1037 A_BomoOtmSK_comp1040600_c0_seq1
209bp
 ionotropic_GABA-aminobutyric_acid_receptor_RDL1-3b6a_[Bombyx_mori]
GO:0002121 P inter-male aggressive behavior
GO:0004890 F GABA-A receptor activity
GO:0005216 F ion channel activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007165 P signal transduction
GO:0007268 P chemical synaptic transmission
GO:0009612 P response to mechanical stimulus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016917 F GABA receptor activity
GO:0030054 C cell junction
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030431 P sleep
GO:0030594 F neurotransmitter receptor activity
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0042493 P response to xenobiotic stimulus
GO:0042749 P regulation of circadian sleep/wake cycle
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046682 P response to cyclodiene
GO:0050805 P negative regulation of synaptic transmission
GO:0090328 P regulation of olfactory learning
GO:0099565 P chemical synaptic transmission, postsynaptic
GO:1902476 P chloride transmembrane transport
FPKM:2.34 TPM:2.52
1038 A_BomoOtmSK_comp1040611_c0_seq1
329bp
FPKM:0.58 TPM:0.63
1039 A_BomoOtmSK_comp1040639_c0_seq1
222bp
FPKM:1.82 TPM:1.97
1040 A_BomoOtmSK_comp1040662_c0_seq1
318bp
FPKM:1.26 TPM:1.36
1041 A_BomoOtmSK_comp1040671_c0_seq1
282bp
FPKM:1.27 TPM:1.37
1042 A_BomoOtmSK_comp10406_c0_seq1
397bp
FPKM:1.40 TPM:1.51
1043 A_BomoOtmSK_comp10406_c1_seq1
212bp
FPKM:1.10 TPM:1.19
1044 A_BomoOtmSK_comp1040714_c0_seq1
278bp
FPKM:1.32 TPM:1.42
1045 A_BomoOtmSK_comp1040725_c0_seq1
227bp
FPKM:1.67 TPM:1.81
1046 A_BomoOtmSK_comp1040731_c0_seq1
223bp
FPKM:0.00 TPM:0.00
1047 A_BomoOtmSK_comp1040744_c0_seq1
235bp
FPKM:0.74 TPM:0.80
1048 A_BomoOtmSK_comp1040832_c0_seq1
213bp
FPKM:1.08 TPM:1.16
1049 A_BomoOtmSK_comp1040837_c0_seq1
258bp
 trafficking_protein_particle_complex_subunit_10_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0030008 C TRAPP complex
GO:0030425 C dendrite
GO:0034498 P early endosome to Golgi transport
GO:0042995 C cell projection
GO:0043087 P regulation of GTPase activity
GO:0043204 C perikaryon
GO:0043547 P positive regulation of GTPase activity
GO:1990071 C TRAPPII protein complex
FPKM:1.09 TPM:1.17
1050 A_BomoOtmSK_comp10408_c0_seq1
214bp
 hypothetical_protein,_partial_[Acinetobacter_baumannii]
FPKM:0.00 TPM:0.00
previous next from show/47999

- SilkBase 1999-2023 -