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Last updated: 2022/11/18

Search Assembled RNA-Seq

next from show/47999
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1 A_BomoOtmSK_comp0_c0_seq1
358bp
 4-coumarate--CoA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0009698 P phenylpropanoid metabolic process
GO:0016207 F 4-coumarate-CoA ligase activity
GO:0016874 F ligase activity
FPKM:1.22 TPM:1.32
2 A_BomoOtmSK_comp0_c1_seq1
582bp
 4-coumarate--CoA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0009698 P phenylpropanoid metabolic process
GO:0016207 F 4-coumarate-CoA ligase activity
GO:0016874 F ligase activity
FPKM:0.76 TPM:0.82
3 A_BomoOtmSK_comp100002_c0_seq1
333bp
FPKM:1.99 TPM:2.15
4 A_BomoOtmSK_comp10000_c0_seq1
542bp
 39S_ribosomal_protein_L55,_mitochondrial_[Bombyx_mori]
GO:0003700 F DNA-binding transcription factor activity
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006355 P regulation of transcription, DNA-templated
GO:0006412 P translation
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
FPKM:21.60 TPM:23.28
5 A_BomoOtmSK_comp10001_c0_seq1
1371bp
 ribosomal_RNA_processing_protein_1_homolog_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0005634 C nucleus
GO:0006364 P rRNA processing
GO:0016072 P rRNA metabolic process
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
FPKM:11.31 TPM:12.19
6 A_BomoOtmSK_comp10002_c0_seq1
1747bp
 uncharacterized_protein_LOC100862770_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0008270 F zinc ion binding
GO:0008631 P intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0022625 C cytosolic large ribosomal subunit
GO:0030687 C preribosome, large subunit precursor
GO:0033674 P positive regulation of kinase activity
GO:0042273 P ribosomal large subunit biogenesis
GO:0043065 P positive regulation of apoptotic process
GO:0043410 P positive regulation of MAPK cascade
GO:0044822 F RNA binding
GO:0046330 P positive regulation of JNK cascade
GO:0046872 F metal ion binding
FPKM:12.55 TPM:13.53
7 A_BomoOtmSK_comp1000330_c0_seq1
280bp
 ets_DNA-binding_protein_pokkuri_[Bombyx_mori]
FPKM:0.86 TPM:0.93
8 A_BomoOtmSK_comp10003_c0_seq1
1064bp
 NADH_dehydrogenase_(ubiquinone)_complex_I,_assembly_factor_6_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0032981 P mitochondrial respiratory chain complex I assembly
FPKM:1.32 TPM:1.42
9 A_BomoOtmSK_comp10003_c0_seq2
1031bp
 NADH_dehydrogenase_(ubiquinone)_complex_I,_assembly_factor_6_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0032981 P mitochondrial respiratory chain complex I assembly
FPKM:1.17 TPM:1.27
10 A_BomoOtmSK_comp100049_c0_seq1
512bp
 retinal-specific_ATP-binding_cassette_transporter-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0055085 P transmembrane transport
FPKM:5.10 TPM:5.50
11 A_BomoOtmSK_comp10004_c0_seq1
1631bp
 E3_ubiquitin-protein_ligase_MYCBP2_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008045 P motor neuron axon guidance
GO:0008270 F zinc ion binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0021785 P branchiomotor neuron axon guidance
GO:0021952 P central nervous system projection neuron axonogenesis
GO:0030424 C axon
GO:0032880 P regulation of protein localization
GO:0042177 P negative regulation of protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048667 P cell morphogenesis involved in neuron differentiation
GO:0051493 P regulation of cytoskeleton organization
FPKM:1.79 TPM:1.93
12 A_BomoOtmSK_comp100051_c0_seq1
470bp
 DNA_replication_licensing_factor_Mcm5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000712 P resolution of meiotic recombination intermediates
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0003688 F DNA replication origin binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0007126 P meiotic cell cycle
GO:0016787 F hydrolase activity
GO:0030261 P chromosome condensation
GO:0032508 P DNA duplex unwinding
GO:0042023 P DNA endoreduplication
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
FPKM:7.20 TPM:7.76
13 A_BomoOtmSK_comp1000528_c0_seq1
310bp
 uncharacterized_protein_LOC101739117_[Bombyx_mori]
FPKM:1.34 TPM:1.44
14 A_BomoOtmSK_comp1000548_c0_seq1
223bp
FPKM:1.79 TPM:1.93
15 A_BomoOtmSK_comp100056_c0_seq1
1652bp
 probable_phospholipid-transporting_ATPase_IIB_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006897 P endocytosis
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
FPKM:4.45 TPM:4.80
16 A_BomoOtmSK_comp10005_c0_seq1
224bp
FPKM:0.88 TPM:0.95
17 A_BomoOtmSK_comp10005_c0_seq2
203bp
FPKM:3.99 TPM:4.30
18 A_BomoOtmSK_comp10006_c0_seq1
1048bp
 uncharacterized_protein_LOC101740193_isoform_X2_[Bombyx_mori]
FPKM:2.78 TPM:3.00
19 A_BomoOtmSK_comp10006_c0_seq2
1133bp
 uncharacterized_protein_LOC101740193_isoform_X1_[Bombyx_mori]
FPKM:14.84 TPM:15.99
20 A_BomoOtmSK_comp10007_c0_seq1
498bp
 uncharacterized_protein_LOC101737207_isoform_X1_[Bombyx_mori]
FPKM:3.14 TPM:3.39
21 A_BomoOtmSK_comp10008_c0_seq1
1476bp
 alpha-2-macroglobulin_receptor-associated_protein_isoform_X2_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0008201 F heparin binding
GO:0009986 C cell surface
GO:0010916 P negative regulation of very-low-density lipoprotein particle clearance
GO:0031982 C vesicle
GO:0032091 P negative regulation of protein binding
GO:0035473 F lipase binding
GO:0048019 F receptor antagonist activity
GO:0048237 C rough endoplasmic reticulum lumen
GO:0050750 F low-density lipoprotein particle receptor binding
GO:0070326 F very-low-density lipoprotein particle receptor binding
GO:1900116 P extracellular negative regulation of signal transduction
GO:1900222 P negative regulation of amyloid-beta clearance
FPKM:2.24 TPM:2.41
22 A_BomoOtmSK_comp10008_c0_seq2
1506bp
 alpha-2-macroglobulin_receptor-associated_protein_isoform_X1_[Bombyx_mori]
GO:0004873 F asialoglycoprotein receptor activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0006457 P protein folding
GO:0006898 P receptor-mediated endocytosis
GO:0008201 F heparin binding
GO:0009986 C cell surface
GO:0010916 P negative regulation of very-low-density lipoprotein particle clearance
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031982 C vesicle
GO:0032091 P negative regulation of protein binding
GO:0035473 F lipase binding
GO:0048019 F receptor antagonist activity
GO:0048237 C rough endoplasmic reticulum lumen
GO:0050750 F low-density lipoprotein particle receptor binding
GO:0051082 F unfolded protein binding
GO:0070326 F very-low-density lipoprotein particle receptor binding
GO:1900116 P extracellular negative regulation of signal transduction
GO:1900222 P negative regulation of amyloid-beta clearance
FPKM:18.00 TPM:19.41
23 A_BomoOtmSK_comp10009_c0_seq1
682bp
 DCMP_deaminase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004132 F dCMP deaminase activity
GO:0006220 P pyrimidine nucleotide metabolic process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0009165 P nucleotide biosynthetic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:1.57 TPM:1.69
24 A_BomoOtmSK_comp10009_c0_seq2
560bp
 DCMP_deaminase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004132 F dCMP deaminase activity
GO:0006220 P pyrimidine nucleotide metabolic process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0009165 P nucleotide biosynthetic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:1.16 TPM:1.25
25 A_BomoOtmSK_comp10009_c0_seq3
703bp
 DCMP_deaminase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004132 F dCMP deaminase activity
GO:0006220 P pyrimidine nucleotide metabolic process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0009165 P nucleotide biosynthetic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:0.64 TPM:0.69
26 A_BomoOtmSK_comp1001021_c0_seq1
263bp
FPKM:1.03 TPM:1.11
27 A_BomoOtmSK_comp10011_c0_seq1
4479bp
 uncharacterized_protein_LOC101737413_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007009 P plasma membrane organization
GO:0008093 F cytoskeletal anchor activity
GO:0008286 P insulin receptor signaling pathway
GO:0009617 P response to bacterium
GO:0015629 C actin cytoskeleton
GO:0030833 P regulation of actin filament polymerization
GO:0030838 P positive regulation of actin filament polymerization
GO:0046626 P regulation of insulin receptor signaling pathway
GO:0051017 P actin filament bundle assembly
GO:0051764 P actin crosslink formation
GO:0070062 C extracellular exosome
GO:0070064 F proline-rich region binding
GO:2000251 P positive regulation of actin cytoskeleton reorganization
FPKM:14.42 TPM:15.55
28 A_BomoOtmSK_comp100124_c0_seq1
1889bp
FPKM:2.11 TPM:2.27
29 A_BomoOtmSK_comp10012_c0_seq1
754bp
FPKM:7.10 TPM:7.66
30 A_BomoOtmSK_comp1001488_c0_seq1
202bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.36 TPM:1.47
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