SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/60564
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2191 A_BomaASG_c13255_g1_i1
280bp
FPKM:4.33 TPM:3.39
2192 A_BomaASG_c13256_g1_i1
209bp
FPKM:11.24 TPM:8.79
2193 A_BomaASG_c13257_g1_i1
707bp
FPKM:4.84 TPM:3.79
2194 A_BomaASG_c13258_g1_i1
275bp
FPKM:1.35 TPM:1.06
2195 A_BomaASG_c13259_g1_i1
226bp
rotatin_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2196 A_BomaASG_c13259_g1_i2
366bp
rotatin_isoform_X2_[Bombyx_mori]
FPKM:2.32 TPM:1.82
2197 A_BomaASG_c13260_g1_i1
306bp
FPKM:2.88 TPM:2.25
2198 A_BomaASG_c13261_g1_i1
430bp
FPKM:2.77 TPM:2.17
2199 A_BomaASG_c13262_g1_i1
887bp
mothers_against_decapentaplegic_homolog_4_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0000988 F obsolete transcription factor activity, protein binding
GO:0001076 F obsolete transcription factor activity, RNA polymerase II transcription factor binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001541 P ovarian follicle development
GO:0001658 P branching involved in ureteric bud morphogenesis
GO:0001666 P response to hypoxia
GO:0001701 P in utero embryonic development
GO:0001702 P gastrulation with mouth forming second
GO:0001822 P kidney development
GO:0003190 P atrioventricular valve formation
GO:0003198 P epithelial to mesenchymal transition involved in endocardial cushion formation
GO:0003251 P positive regulation of cell proliferation involved in heart valve morphogenesis
GO:0003279 P cardiac septum development
GO:0003360 P brainstem development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005518 F collagen binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006879 P cellular iron ion homeostasis
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007183 P SMAD protein complex assembly
GO:0007283 P spermatogenesis
GO:0007338 P single fertilization
GO:0007369 P gastrulation
GO:0007411 P axon guidance
GO:0007492 P endoderm development
GO:0007498 P mesoderm development
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0008584 P male gonad development
GO:0008585 P female gonad development
GO:0009952 P anterior/posterior pattern specification
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0014033 P neural crest cell differentiation
GO:0017015 P regulation of transforming growth factor beta receptor signaling pathway
GO:0030308 P negative regulation of cell growth
GO:0030509 P BMP signaling pathway
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030513 P positive regulation of BMP signaling pathway
GO:0030616 F obsolete transforming growth factor beta receptor, common-partner cytoplasmic mediator activity
GO:0032444 C activin responsive factor complex
GO:0032525 P somite rostral/caudal axis specification
GO:0032909 P regulation of transforming growth factor beta2 production
GO:0033686 P positive regulation of luteinizing hormone secretion
GO:0035556 P intracellular signal transduction
GO:0036302 P atrioventricular canal development
GO:0042118 P endothelial cell activation
GO:0042127 P regulation of cell population proliferation
GO:0042177 P negative regulation of protein catabolic process
GO:0042733 P embryonic digit morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0046881 P positive regulation of follicle-stimulating hormone secretion
GO:0046982 F protein heterodimerization activity
GO:0048589 P developmental growth
GO:0048663 P neuron fate commitment
GO:0048729 P tissue morphogenesis
GO:0048733 P sebaceous gland development
GO:0048859 P formation of anatomical boundary
GO:0051098 P regulation of binding
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0051797 P regulation of hair follicle development
GO:0060021 P roof of mouth development
GO:0060065 P uterus development
GO:0060391 P positive regulation of SMAD protein signal transduction
GO:0060395 P SMAD protein signal transduction
GO:0060548 P negative regulation of cell death
GO:0060956 P endocardial cell differentiation
GO:0061040 P female gonad morphogenesis
GO:0070102 P interleukin-6-mediated signaling pathway
GO:0070411 F I-SMAD binding
GO:0070412 F R-SMAD binding
GO:0071141 C SMAD protein complex
GO:0071559 P response to transforming growth factor beta
GO:0072133 P metanephric mesenchyme morphogenesis
GO:0072134 P nephrogenic mesenchyme morphogenesis
GO:0072520 P seminiferous tubule development
GO:0090575 C RNA polymerase II transcription regulator complex
GO:2000617 P positive regulation of histone H3-K9 acetylation
FPKM:2.46 TPM:1.92
2200 A_BomaASG_c13263_g1_i1
1205bp
latrophilin_Cirl_isoform_X6_[Helicoverpa_armigera]
GO:0001764 P neuron migration
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005911 C cell-cell junction
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007416 P synapse assembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030246 F carbohydrate binding
GO:0030424 C axon
GO:0031987 P locomotion involved in locomotory behavior
GO:0042220 P response to cocaine
GO:0042995 C cell projection
GO:0046872 F metal ion binding
GO:0051965 P positive regulation of synapse assembly
GO:0098609 P cell-cell adhesion
FPKM:1.92 TPM:1.50
2201 A_BomaASG_c13264_g1_i1
207bp
PREDICTED:_cryptochrome-1_[Amyelois_transitella]
FPKM:4.83 TPM:3.78
2202 A_BomaASG_c13265_g1_i1
1108bp
serine/threonine_protein_phosphatase_6_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000278 P mitotic cell cycle
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:15.74 TPM:12.32
2203 A_BomaASG_c13266_g1_i1
717bp
FPKM:3.20 TPM:2.51
2204 A_BomaASG_c13268_g1_i1
591bp
FPKM:2.88 TPM:2.25
2205 A_BomaASG_c13268_g1_i2
329bp
FPKM:0.94 TPM:0.73
2206 A_BomaASG_c1326_g1_i1
251bp
uncharacterized_protein_LOC101744529_isoform_X2_[Bombyx_mori]
FPKM:1.67 TPM:1.31
2207 A_BomaASG_c13271_g1_i1
240bp
FPKM:5.01 TPM:3.92
2208 A_BomaASG_c13272_g1_i1
606bp
spidroin-1_[Bombyx_mori]
FPKM:3.63 TPM:2.84
2209 A_BomaASG_c13273_g1_i1
295bp
unconventional_myosin-Va_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0031941 C filamentous actin
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0060001 F minus-end directed microfilament motor activity
GO:0072659 P protein localization to plasma membrane
FPKM:1.62 TPM:1.27
2210 A_BomaASG_c13273_g1_i2
387bp
unconventional_myosin-Va_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0031941 C filamentous actin
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0060001 F minus-end directed microfilament motor activity
GO:0072659 P protein localization to plasma membrane
FPKM:1.84 TPM:1.44
2211 A_BomaASG_c13274_g1_i1
278bp
ribosomal_protein_S6_kinase,_90_kDa_isoform_X1_[Bombyx_mori]
FPKM:5.28 TPM:4.13
2212 A_BomaASG_c13276_g1_i1
527bp
FPKM:3.08 TPM:2.41
2213 A_BomaASG_c13279_g1_i1
372bp
FPKM:3.26 TPM:2.55
2214 A_BomaASG_c1327_g1_i1
216bp
FPKM:0.00 TPM:0.00
2215 A_BomaASG_c13280_g1_i1
364bp
FPKM:0.00 TPM:0.00
2216 A_BomaASG_c13280_g1_i2
563bp
FPKM:2.54 TPM:1.99
2217 A_BomaASG_c13281_g1_i1
319bp
FPKM:1.33 TPM:1.04
2218 A_BomaASG_c13281_g1_i2
251bp
FPKM:0.00 TPM:0.00
2219 A_BomaASG_c13282_g1_i1
719bp
putative_deoxynucleoside_kinase_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004797 F thymidine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006165 P nucleoside diphosphate phosphorylation
GO:0006230 P TMP biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019136 F deoxynucleoside kinase activity
GO:0019206 F nucleoside kinase activity
GO:0046939 P nucleotide phosphorylation
GO:0071897 P DNA biosynthetic process
FPKM:4.54 TPM:3.56
2220 A_BomaASG_c13284_g1_i1
297bp
FPKM:0.00 TPM:0.00
previous next from show/60564

- SilkBase 1999-2023 -