SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/60564
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1231 A_BomaASG_c12008_g1_i1
436bp
FPKM:5.23 TPM:4.10
1232 A_BomaASG_c12009_g1_i1
284bp
PREDICTED:_uncharacterized_protein_LOC105564750,_partial_[Vollenhovia_emeryi]
FPKM:1.68 TPM:1.31
1233 A_BomaASG_c12010_g1_i1
239bp
FPKM:3.80 TPM:2.98
1234 A_BomaASG_c12011_g1_i1
815bp
FPKM:2.48 TPM:1.94
1235 A_BomaASG_c12013_g1_i1
279bp
cytoplasmic_dynein_2_heavy_chain_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005874 C microtubule
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007018 P microtubule-based movement
GO:0007030 P Golgi organization
GO:0007275 P multicellular organism development
GO:0007368 P determination of left/right symmetry
GO:0007507 P heart development
GO:0008105 P protein localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0016485 P protein processing
GO:0016887 F ATP hydrolysis activity
GO:0021522 P spinal cord motor neuron differentiation
GO:0030030 P cell projection organization
GO:0030182 P neuron differentiation
GO:0030286 C dynein complex
GO:0030326 P embryonic limb morphogenesis
GO:0030900 P forebrain development
GO:0031512 C motile cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045177 C apical part of cell
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0060271 P cilium assembly
GO:0060976 P coronary vasculature development
GO:0070062 C extracellular exosome
FPKM:2.18 TPM:1.71
1236 A_BomaASG_c12013_g2_i1
222bp
cytoplasmic_dynein_2_heavy_chain_1_[Bombyx_mori]
FPKM:0.78 TPM:0.61
1237 A_BomaASG_c12014_g1_i1
238bp
FPKM:3.20 TPM:2.51
1238 A_BomaASG_c12015_g1_i1
779bp
leucine-rich_repeat_serine/threonine-protein_kinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006979 P response to oxidative stress
GO:0007264 P small GTPase mediated signal transduction
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0034613 P cellular protein localization
GO:0034976 P response to endoplasmic reticulum stress
GO:0043025 C neuronal cell body
GO:0046872 F metal ion binding
GO:0048489 P synaptic vesicle transport
GO:0048846 P axon extension involved in axon guidance
GO:1901215 P negative regulation of neuron death
FPKM:1.84 TPM:1.44
1239 A_BomaASG_c12017_g1_i1
245bp
FPKM:0.00 TPM:0.00
1240 A_BomaASG_c12018_g1_i1
581bp
forkhead_box_protein_N3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008022 F protein C-terminus binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0097094 P craniofacial suture morphogenesis
FPKM:0.34 TPM:0.26
1241 A_BomaASG_c12018_g1_i2
569bp
forkhead_box_protein_N3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008022 F protein C-terminus binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0097094 P craniofacial suture morphogenesis
FPKM:2.55 TPM:1.99
1242 A_BomaASG_c12019_g1_i1
251bp
FPKM:2.79 TPM:2.19
1243 A_BomaASG_c1201_g1_i1
718bp
LOW_QUALITY_PROTEIN:_adhesion_G_protein-coupled_receptor_A3_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001944 P vasculature development
GO:0002040 P sprouting angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:1990791 P dorsal root ganglion development
FPKM:2.71 TPM:2.12
1244 A_BomaASG_c12020_g1_i1
261bp
FPKM:3.56 TPM:2.78
1245 A_BomaASG_c12021_g1_i1
508bp
FPKM:1.85 TPM:1.45
1246 A_BomaASG_c12023_g1_i1
250bp
FPKM:2.26 TPM:1.77
1247 A_BomaASG_c12025_g1_i1
347bp
SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
FPKM:4.24 TPM:3.32
1248 A_BomaASG_c12026_g1_i1
314bp
FPKM:1.37 TPM:1.07
1249 A_BomaASG_c12027_g1_i1
240bp
FPKM:2.51 TPM:1.96
1250 A_BomaASG_c12028_g1_i1
467bp
FPKM:1.57 TPM:1.23
1251 A_BomaASG_c1202_g1_i1
359bp
uncharacterized_protein_LOC101746893_isoform_X1_[Bombyx_mori]
FPKM:2.27 TPM:1.77
1252 A_BomaASG_c1202_g1_i2
265bp
uncharacterized_protein_LOC101746893_isoform_X1_[Bombyx_mori]
FPKM:0.73 TPM:0.57
1253 A_BomaASG_c12031_g1_i1
271bp
FPKM:0.93 TPM:0.73
1254 A_BomaASG_c12032_g1_i1
329bp
vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
FPKM:3.44 TPM:2.69
1255 A_BomaASG_c12036_g1_i1
206bp
uncharacterized_protein_LOC110375727_isoform_X1_[Helicoverpa_armigera]
FPKM:2.94 TPM:2.30
1256 A_BomaASG_c12037_g1_i1
399bp
FPKM:3.35 TPM:2.62
1257 A_BomaASG_c12039_g1_i1
427bp
FPKM:3.60 TPM:2.82
1258 A_BomaASG_c12040_g1_i1
406bp
agrin_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:3.69 TPM:2.89
1259 A_BomaASG_c12042_g1_i1
208bp
FPKM:1.90 TPM:1.49
1260 A_BomaASG_c12043_g1_i1
275bp
Pol_protein_[Bombyx_mori]
FPKM:1.80 TPM:1.41
previous next from show/60564

- SilkBase 1999-2023 -