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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

991

A_BomoMSG_c11084_g1_i1

437bp

Bomo_Chr21

chemosensory_protein_16_isoform_X1_[Bombyx_mori]

GO:0005576	C	extracellular region
GO:0007552	P	metamorphosis
GO:0007610	P	behavior
GO:0009615	P	response to virus
GO:0045297	P	obsolete post-mating behavior

FPKM:2.92 TPM:1.52

992

A_BomoMSG_c11086_g1_i1

1289bp

Bomo_Chr25

presenilin-1_isoform_X2_[Bombyx_mori]

GO:0000139	C	Golgi membrane
GO:0002027	P	regulation of heart rate
GO:0004175	F	endopeptidase activity
GO:0004190	F	aspartic-type endopeptidase activity
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005770	C	late endosome
GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0005794	C	Golgi apparatus
GO:0005887	C	integral component of plasma membrane
GO:0005938	C	cell cortex
GO:0006508	P	proteolysis
GO:0006509	P	membrane protein ectodomain proteolysis
GO:0006816	P	calcium ion transport
GO:0006915	P	apoptotic process
GO:0007010	P	cytoskeleton organization
GO:0007219	P	Notch signaling pathway
GO:0007220	P	Notch receptor processing
GO:0008233	F	peptidase activity
GO:0008593	P	regulation of Notch signaling pathway
GO:0015677	P	copper ion import
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016324	C	apical plasma membrane
GO:0016337	P	cell-cell adhesion
GO:0016485	P	protein processing
GO:0016787	F	hydrolase activity
GO:0030018	C	Z disc
GO:0042803	F	protein homodimerization activity
GO:0042987	P	amyloid precursor protein catabolic process
GO:0043025	C	neuronal cell body
GO:0043066	P	negative regulation of apoptotic process
GO:0046331	P	lateral inhibition
GO:0048190	P	wing disc dorsal/ventral pattern formation
GO:0048471	C	perinuclear region of cytoplasm
GO:0048812	P	neuron projection morphogenesis
GO:0050435	P	amyloid-beta metabolic process
GO:0055037	C	recycling endosome
GO:0070765	C	gamma-secretase complex

FPKM:44.73 TPM:23.27

993

A_BomoMSG_c11088_g1_i1

272bp

Bomo_Chr12

menin_[Bombyx_mori]

FPKM:12.24 TPM:6.37

994

A_BomoMSG_c11089_g1_i1

616bp

Bomo_Chr10

telomerase-binding_protein_EST1A-like_[Bombyx_mori]

GO:0000184	P	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000333	C	telomerase catalytic core complex
GO:0000723	P	telomere maintenance
GO:0000781	C	chromosome, telomeric region
GO:0003677	F	DNA binding
GO:0004518	F	nuclease activity
GO:0004519	F	endonuclease activity
GO:0004521	F	endoribonuclease activity
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0016787	F	hydrolase activity
GO:0035145	C	exon-exon junction complex
GO:0042162	F	telomeric DNA binding
GO:0043021	F	ribonucleoprotein complex binding
GO:0046872	F	metal ion binding
GO:0070034	F	telomerase RNA binding
GO:0070182	F	DNA polymerase binding
GO:0090502	P	RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1904354	P	negative regulation of telomere capping

FPKM:4.88 TPM:2.54

995

A_BomoMSG_c1108_g1_i1

228bp

Bomo_Chr13

FPKM:3.00 TPM:1.56

996

A_BomoMSG_c11090_g1_i1

584bp

Bomo_Chr27

FPKM:3.73 TPM:1.94

997

A_BomoMSG_c11091_g1_i1

444bp

Bomo_Chr3

hypothetical_protein_[Enterococcus_faecium]

FPKM:12.78 TPM:6.65

998

A_BomoMSG_c11092_g1_i1

392bp

Bomo_Chr18

FPKM:4.95 TPM:2.58

999

A_BomoMSG_c11093_g1_i1

521bp

Bomo_Chr21

FPKM:2.91 TPM:1.51

1000

A_BomoMSG_c11095_g1_i1

474bp

Bomo_Chr22

Uncharacterized_protein_OBRU01_21437_[Operophtera_brumata]

FPKM:3.70 TPM:1.93

1001

A_BomoMSG_c11095_g1_i2

415bp

Bomo_Chr22

Uncharacterized_protein_OBRU01_21437_[Operophtera_brumata]

FPKM:2.94 TPM:1.53

1002

A_BomoMSG_c11096_g1_i1

1220bp

Bomo_Chr5

protein_argonaute-2_isoform_X2_[Helicoverpa_armigera]

GO:0000932	C	P-body
GO:0000956	P	nuclear-transcribed mRNA catabolic process
GO:0000978	F	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000993	F	RNA polymerase II complex binding
GO:0001047	F	core promoter sequence-specific DNA binding
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0003725	F	double-stranded RNA binding
GO:0003727	F	single-stranded RNA binding
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005844	C	polysome
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006417	P	regulation of translation
GO:0010501	P	RNA secondary structure unwinding
GO:0010586	P	miRNA metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0016442	C	RISC complex
GO:0030529	C	ribonucleoprotein complex
GO:0031047	P	gene silencing by RNA
GO:0031054	P	pre-miRNA processing
GO:0035068	C	RISC complex
GO:0035196	P	production of miRNAs involved in gene silencing by miRNA
GO:0035198	F	miRNA binding
GO:0035278	P	miRNA-mediated gene silencing by inhibition of translation
GO:0035280	P	miRNA loading onto RISC involved in gene silencing by miRNA
GO:0044212	F	transcription cis-regulatory region binding
GO:0044822	F	RNA binding
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0070578	C	RISC-loading complex

FPKM:2.24 TPM:1.16

1003

A_BomoMSG_c11098_g1_i1

659bp

Bomo_Chr24

zinc_finger_protein_81_isoform_X1_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding

FPKM:1.65 TPM:0.86

1004

A_BomoMSG_c11099_g1_i1

370bp

Bomo_Chr7

PREDICTED:_uncharacterized_protein_LOC106717337_[Papilio_machaon]

FPKM:1.36 TPM:0.71

1005

A_BomoMSG_c1109_g1_i1

324bp

Bomo_Chr16

PREDICTED:_uncharacterized_protein_LOC106113369_[Papilio_xuthus]

FPKM:1.38 TPM:0.72

1006

A_BomoMSG_c110_g1_i1

266bp

Bomo_Chr20

FPKM:1.03 TPM:0.54

1007

A_BomoMSG_c11100_g1_i1

981bp

Bomo_Chr1

FPKM:1.87 TPM:0.97

1008

A_BomoMSG_c11101_g1_i1

506bp

Bomo_Chr19

FPKM:3.87 TPM:2.01

1009

A_BomoMSG_c11103_g1_i1

644bp

Bomo_Chr1

uncharacterized_protein_LOC101742281_isoform_X1_[Bombyx_mori]

FPKM:3.27 TPM:1.70

1010

A_BomoMSG_c11104_g1_i1

668bp

Bomo_Chr12

FPKM:2.89 TPM:1.50

1011

A_BomoMSG_c11107_g1_i1

201bp

Bomo_Chr25

FPKM:3.26 TPM:1.70

1012

A_BomoMSG_c11110_g1_i1

615bp

Bomo_Chr21

FPKM:2.83 TPM:1.47

1013

A_BomoMSG_c11111_g1_i1

876bp

Bomo_Chr21

chondroitin_sulfate_synthase_1_[Bombyx_mori]

GO:0000139	C	Golgi membrane
GO:0002063	P	chondrocyte development
GO:0005576	C	extracellular region
GO:0005794	C	Golgi apparatus
GO:0008376	F	acetylgalactosaminyltransferase activity
GO:0009954	P	proximal/distal pattern formation
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016740	F	transferase activity
GO:0016757	F	glycosyltransferase activity
GO:0030206	P	chondroitin sulfate biosynthetic process
GO:0030279	P	negative regulation of ossification
GO:0031667	P	response to nutrient levels
GO:0032580	C	Golgi cisterna membrane
GO:0045880	P	positive regulation of smoothened signaling pathway
GO:0046872	F	metal ion binding
GO:0047238	F	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510	F	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
GO:0051216	P	cartilage development
GO:0051923	P	sulfation
GO:0060349	P	bone morphogenesis

FPKM:3.46 TPM:1.80

1014

A_BomoMSG_c11112_g1_i1

1801bp

Bomo_Chr12

spermidine_synthase_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0004766	F	spermidine synthase activity
GO:0006595	P	polyamine metabolic process
GO:0006596	P	polyamine biosynthetic process
GO:0008295	P	spermidine biosynthetic process
GO:0016740	F	transferase activity
GO:0042803	F	protein homodimerization activity