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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1021 A_BomoMSG_c1111_g1_i1
289bp
FPKM:1.72 TPM:0.90
1022 A_BomoMSG_c11121_g1_i1
605bp
FPKM:4.87 TPM:2.53
1023 A_BomoMSG_c11122_g1_i1
242bp
 uncharacterized_protein_LOC101746353_isoform_X1_[Bombyx_mori]
FPKM:2.57 TPM:1.34
1024 A_BomoMSG_c11122_g2_i1
274bp
 uncharacterized_protein_LOC101746213_[Bombyx_mori]
FPKM:3.10 TPM:1.61
1025 A_BomoMSG_c11122_g2_i2
323bp
 uncharacterized_protein_LOC101746213_[Bombyx_mori]
FPKM:5.74 TPM:2.99
1026 A_BomoMSG_c11123_g1_i1
413bp
 ADAM_17-like_protease_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:2.96 TPM:1.54
1027 A_BomoMSG_c11124_g1_i1
687bp
 uncharacterized_protein_LOC101739130_isoform_X1_[Bombyx_mori]
FPKM:4.80 TPM:2.49
1028 A_BomoMSG_c11125_g1_i1
499bp
 muscle_M-line_assembly_protein_unc-89-like_[Bombyx_mori]
FPKM:1.55 TPM:0.80
1029 A_BomoMSG_c11126_g1_i1
556bp
FPKM:3.84 TPM:2.00
1030 A_BomoMSG_c11128_g1_i1
1372bp
 Fanconi_anemia_group_M_protein_[Bombyx_mori]
FPKM:2.94 TPM:1.53
1031 A_BomoMSG_c11130_g1_i1
223bp
 putative_transportin_1_[Operophtera_brumata]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0072372 C cilium
FPKM:8.77 TPM:4.56
1032 A_BomoMSG_c11131_g1_i1
512bp
 peroxidasin_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005783 C endoplasmic reticulum
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0042744 P hydrogen peroxide catabolic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0098869 P cellular oxidant detoxification
FPKM:4.80 TPM:2.50
1033 A_BomoMSG_c11133_g1_i1
447bp
FPKM:1.61 TPM:0.84
1034 A_BomoMSG_c11134_g1_i1
338bp
FPKM:3.19 TPM:1.66
1035 A_BomoMSG_c11135_g1_i1
204bp
 protein_kibra_[Helicoverpa_armigera]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0035330 P regulation of hippo signaling
FPKM:6.23 TPM:3.24
1036 A_BomoMSG_c11136_g1_i1
334bp
 prophenoloxidase-2s_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0004503 F tyrosinase activity
GO:0005576 C extracellular region
GO:0006583 P melanin biosynthetic process from tyrosine
GO:0006952 P defense response
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0042438 P melanin biosynthetic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.24 TPM:2.20
1037 A_BomoMSG_c11137_g1_i1
213bp
FPKM:10.00 TPM:5.20
1038 A_BomoMSG_c11138_g1_i1
435bp
 DENN_domain-containing_protein_1A_isoform_X3_[Bombyx_mori]
FPKM:3.15 TPM:1.64
1039 A_BomoMSG_c1113_g1_i1
505bp
 hypothetical_protein_TcasGA2_TC002200_[Tribolium_castaneum]
FPKM:1.18 TPM:0.61
1040 A_BomoMSG_c11140_g1_i1
356bp
FPKM:4.07 TPM:2.12
1041 A_BomoMSG_c11141_g1_i1
668bp
 RNA-dependent_RNA_polymerase,_partial_[Orinoco_virus]
FPKM:3.47 TPM:1.80
1042 A_BomoMSG_c11142_g1_i1
323bp
 dorsal-ventral_patterning_protein_Sog_isoform_X2_[Bombyx_mori]
GO:0005518 F collagen binding
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007313 P maternal specification of dorsal/ventral axis, oocyte, soma encoded
GO:0007354 P zygotic determination of anterior/posterior axis, embryo
GO:0007362 P terminal region determination
GO:0007378 P amnioserosa formation
GO:0007398 P ectoderm development
GO:0008083 F growth factor activity
GO:0008293 P torso signaling pathway
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030509 P BMP signaling pathway
GO:0030510 P regulation of BMP signaling pathway
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0035271 P ring gland development
GO:0040008 P regulation of growth
GO:0061328 P posterior Malpighian tubule development
FPKM:2.08 TPM:1.08
1043 A_BomoMSG_c11143_g1_i1
580bp
 LOW_QUALITY_PROTEIN:_protein_CLEC16A_[Bombyx_mori]
FPKM:3.34 TPM:1.74
1044 A_BomoMSG_c11144_g1_i1
2073bp
 meiotic_recombination_11_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0007062 P sister chromatid cohesion
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007507 P heart development
GO:0008022 F protein C-terminus binding
GO:0008283 P cell population proliferation
GO:0008408 F 3'-5' exonuclease activity
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0030145 F manganese ion binding
GO:0030870 C Mre11 complex
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0031860 P telomeric 3' overhang formation
GO:0031954 P positive regulation of protein autophosphorylation
GO:0032206 P positive regulation of telomere maintenance
GO:0032508 P DNA duplex unwinding
GO:0032876 P negative regulation of DNA endoreduplication
GO:0033674 P positive regulation of kinase activity
GO:0035861 C site of double-strand break
GO:0043066 P negative regulation of apoptotic process
GO:0046597 P negative regulation of viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0051276 P chromosome organization
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:50.76 TPM:26.41
1045 A_BomoMSG_c11146_g1_i1
683bp
 hypothetical_protein_YQE_12245,_partial_[Dendroctonus_ponderosae]
FPKM:1.57 TPM:0.82
1046 A_BomoMSG_c11147_g1_i1
791bp
 multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007368 P determination of left/right symmetry
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030326 P embryonic limb morphogenesis
GO:0030509 P BMP signaling pathway
GO:0035108 P limb morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0055113 P epiboly involved in gastrulation with mouth forming second
GO:0060971 P embryonic heart tube left/right pattern formation
GO:0060972 P left/right pattern formation
GO:0060976 P coronary vasculature development
GO:0061371 P determination of heart left/right asymmetry
GO:0070062 C extracellular exosome
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0097094 P craniofacial suture morphogenesis
GO:0097155 P fasciculation of sensory neuron axon
FPKM:4.39 TPM:2.28
1047 A_BomoMSG_c11148_g1_i1
278bp
FPKM:5.14 TPM:2.67
1048 A_BomoMSG_c11149_g1_i1
2480bp
 25S_rRNA_(cytosine-C(5))-methyltransferase_nop2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0008757 F S-adenosylmethionine-dependent methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0044822 F RNA binding
FPKM:41.52 TPM:21.60
1049 A_BomoMSG_c11151_g1_i1
202bp
 sex-linked_proline_rich_protein,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1050 A_BomoMSG_c11151_g1_i2
280bp
 sex-linked_proline_rich_protein,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
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