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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
961 A_BomoMSG_c11054_g1_i1
259bp
FPKM:8.74 TPM:4.55
962 A_BomoMSG_c11055_g1_i1
255bp
FPKM:4.53 TPM:2.36
963 A_BomoMSG_c11056_g1_i1
231bp
FPKM:7.97 TPM:4.15
964 A_BomoMSG_c11057_g1_i1
399bp
 growth_arrest_and_DNA_damage-inducible_protein_GADD45_alpha_[Bombyx_mori]
FPKM:3.61 TPM:1.88
965 A_BomoMSG_c11059_g1_i1
210bp
FPKM:1.90 TPM:0.99
966 A_BomoMSG_c1105_g1_i1
485bp
 uncharacterized_protein_C20orf24_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0008150 P biological_process
FPKM:28.27 TPM:14.71
967 A_BomoMSG_c11060_g1_i1
1121bp
 ubiquitin_fusion_degradation_protein_1_homolog_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0098586 P cellular response to virus
FPKM:38.72 TPM:20.15
968 A_BomoMSG_c11061_g1_i1
266bp
 trithorax_group_protein_osa_[Bombyx_mori]
FPKM:3.09 TPM:1.61
969 A_BomoMSG_c11061_g2_i1
457bp
 PREDICTED:_trithorax_group_protein_osa-like_isoform_X3_[Papilio_polytes]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0014017 P neuroblast fate commitment
GO:0016055 P Wnt signaling pathway
GO:0016568 P chromatin organization
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0035060 C brahma complex
GO:0042058 P regulation of epidermal growth factor receptor signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046530 P photoreceptor cell differentiation
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0090544 C SWI/SNF superfamily-type complex
FPKM:5.47 TPM:2.84
970 A_BomoMSG_c11062_g1_i1
292bp
 PREDICTED:_mitotic_spindle_assembly_checkpoint_protein_MAD2B_[Plutella_xylostella]
FPKM:1.26 TPM:0.66
971 A_BomoMSG_c11063_g1_i1
753bp
 phosphofurin_acidic_cluster_sorting_protein_1_isoform_X4_[Bombyx_mori]
FPKM:0.21 TPM:0.11
972 A_BomoMSG_c11063_g1_i2
874bp
 phosphofurin_acidic_cluster_sorting_protein_1_isoform_X2_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0032092 P positive regulation of protein binding
GO:0034613 P cellular protein localization
GO:0044325 F transmembrane transporter binding
GO:0048471 C perinuclear region of cytoplasm
GO:0072661 P protein localization to plasma membrane
FPKM:0.98 TPM:0.51
973 A_BomoMSG_c11064_g1_i1
386bp
 ATP-binding_cassette_sub-family_C_member_Sur_isoform_X2_[Bombyx_mori]
FPKM:7.37 TPM:3.83
974 A_BomoMSG_c11065_g1_i1
604bp
 zinc_finger_protein_85_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0017053 C transcription repressor complex
GO:0019827 P stem cell population maintenance
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 P negative regulation of granulocyte differentiation
GO:0033613 F DNA-binding transcription factor binding
GO:0035019 P somatic stem cell population maintenance
GO:0043457 P regulation of cellular respiration
GO:0043565 F sequence-specific DNA binding
GO:0043586 P tongue development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0050872 P white fat cell differentiation
GO:0050873 P brown fat cell differentiation
GO:0060021 P roof of mouth development
GO:0090336 P positive regulation of brown fat cell differentiation
FPKM:3.30 TPM:1.72
975 A_BomoMSG_c11067_g1_i1
254bp
FPKM:2.86 TPM:1.49
976 A_BomoMSG_c11068_g1_i1
392bp
 vesicle-fusing_ATPase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0007430 P terminal branching, open tracheal system
GO:0008152 P metabolic process
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0015031 P protein transport
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031201 C SNARE complex
GO:0035494 P SNARE complex disassembly
GO:0043001 P Golgi to plasma membrane protein transport
GO:0046872 F metal ion binding
GO:0048211 P Golgi vesicle docking
GO:0060439 P trachea morphogenesis
GO:0098793 C presynapse
FPKM:1.07 TPM:0.55
977 A_BomoMSG_c11068_g1_i2
476bp
 vesicle-fusing_ATPase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0008021 C synaptic vesicle
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0032403 F protein-containing complex binding
GO:0035494 P SNARE complex disassembly
GO:0043001 P Golgi to plasma membrane protein transport
GO:0043195 C terminal bouton
GO:0046872 F metal ion binding
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048211 P Golgi vesicle docking
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
FPKM:3.07 TPM:1.60
978 A_BomoMSG_c11069_g1_i1
227bp
 transmembrane_protein_169_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.04 TPM:1.58
979 A_BomoMSG_c1106_g1_i1
298bp
FPKM:3.24 TPM:1.68
980 A_BomoMSG_c11070_g1_i1
217bp
FPKM:3.45 TPM:1.79
981 A_BomoMSG_c11071_g1_i1
277bp
FPKM:3.29 TPM:1.71
982 A_BomoMSG_c11072_g1_i1
487bp
 polyprotein,_partial_[Bombyx_mori]
FPKM:1.42 TPM:0.74
983 A_BomoMSG_c11073_g1_i1
799bp
FPKM:52.08 TPM:27.09
984 A_BomoMSG_c11074_g1_i1
457bp
 ubiquitin_carboxyl-terminal_hydrolase_35_isoform_X1_[Bombyx_mori]
FPKM:4.88 TPM:2.54
985 A_BomoMSG_c11077_g1_i1
950bp
 ubiquitin-conjugating_enzyme_E2_G2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0070936 P protein K48-linked ubiquitination
FPKM:29.44 TPM:15.31
986 A_BomoMSG_c1107_g1_i1
224bp
FPKM:1.58 TPM:0.82
987 A_BomoMSG_c11080_g1_i1
289bp
FPKM:1.72 TPM:0.90
988 A_BomoMSG_c11081_g1_i1
779bp
FPKM:38.98 TPM:20.28
989 A_BomoMSG_c11082_g1_i1
276bp
FPKM:1.90 TPM:0.99
990 A_BomoMSG_c11083_g1_i1
352bp
FPKM:48.67 TPM:25.32
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