SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
721 A_BomoMSG_c10785_g1_i1
382bp
FPKM:5.17 TPM:2.69
722 A_BomoMSG_c10786_g1_i1
325bp
 uncharacterized_protein_LOC101737731_[Bombyx_mori]
FPKM:1.71 TPM:0.89
723 A_BomoMSG_c10787_g1_i1
241bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_23_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0072358 P circulatory system development
FPKM:4.55 TPM:2.37
724 A_BomoMSG_c10788_g1_i1
491bp
 3-ketoacyl-CoA_thiolase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071456 P cellular response to hypoxia
GO:1901029 P negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:1902109 P negative regulation of mitochondrial membrane permeability involved in apoptotic process
FPKM:6.50 TPM:3.38
725 A_BomoMSG_c10789_g1_i1
302bp
FPKM:4.33 TPM:2.26
726 A_BomoMSG_c1078_g1_i1
215bp
FPKM:2.65 TPM:1.38
727 A_BomoMSG_c10790_g1_i1
415bp
FPKM:2.49 TPM:1.29
728 A_BomoMSG_c10791_g1_i1
407bp
FPKM:2.57 TPM:1.33
729 A_BomoMSG_c10792_g1_i1
253bp
FPKM:2.89 TPM:1.50
730 A_BomoMSG_c10793_g1_i1
373bp
 uncharacterized_protein_LOC105841632_[Bombyx_mori]
FPKM:3.23 TPM:1.68
731 A_BomoMSG_c10793_g1_i2
326bp
FPKM:0.00 TPM:0.00
732 A_BomoMSG_c10794_g1_i1
502bp
 endoplasmic_reticulum_metallopeptidase_1_isoform_X3_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:1.87 TPM:0.97
733 A_BomoMSG_c10795_g1_i1
210bp
FPKM:0.00 TPM:0.00
734 A_BomoMSG_c10796_g1_i1
2103bp
 PREDICTED:_endoribonuclease_Dcr-1-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0007279 P pole cell formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007367 P segment polarity determination
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0016443 F bidentate ribonuclease III activity
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0033227 P dsRNA transport
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042078 P germ-line stem cell division
GO:0042594 P response to starvation
GO:0045448 P mitotic cell cycle, embryonic
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0070883 F pre-miRNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:2.97 TPM:1.55
735 A_BomoMSG_c10797_g1_i1
312bp
FPKM:3.33 TPM:1.73
736 A_BomoMSG_c10798_g1_i1
306bp
FPKM:3.07 TPM:1.60
737 A_BomoMSG_c107_g1_i1
597bp
 centrin_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0031683 F G-protein beta/gamma-subunit complex binding
GO:0032391 C photoreceptor connecting cilium
GO:0032795 F heterotrimeric G-protein binding
GO:0034605 P cellular response to heat
GO:0046872 F metal ion binding
GO:0051301 P cell division
FPKM:19.03 TPM:9.90
738 A_BomoMSG_c10801_g1_i1
326bp
FPKM:5.79 TPM:3.01
739 A_BomoMSG_c10801_g2_i1
346bp
 GPI_ethanolamine_phosphate_transferase_2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0051267 F CP2 mannose-ethanolamine phosphotransferase activity
FPKM:2.45 TPM:1.27
740 A_BomoMSG_c10802_g1_i1
240bp
FPKM:3.28 TPM:1.71
741 A_BomoMSG_c10803_g1_i1
443bp
FPKM:3.27 TPM:1.70
742 A_BomoMSG_c10804_g1_i1
418bp
 integrator_complex_subunit_1,_partial_[Bombyx_mori]
GO:0001832 P blastocyst growth
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0034474 P U2 snRNA 3'-end processing
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
FPKM:1.26 TPM:0.66
743 A_BomoMSG_c10804_g1_i2
940bp
 integrator_complex_subunit_1,_partial_[Bombyx_mori]
GO:0001832 P blastocyst growth
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0034474 P U2 snRNA 3'-end processing
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
FPKM:1.69 TPM:0.88
744 A_BomoMSG_c10805_g1_i1
572bp
 hypothetical_protein_RF55_14266_[Lasius_niger]
FPKM:3.41 TPM:1.77
745 A_BomoMSG_c10806_g1_i1
231bp
FPKM:1.45 TPM:0.75
746 A_BomoMSG_c10807_g1_i1
300bp
 ATP-binding_cassette_sub-family_D_member_2_[Bombyx_mori]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0032000 P positive regulation of fatty acid beta-oxidation
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0055085 P transmembrane transport
FPKM:1.80 TPM:0.94
747 A_BomoMSG_c10807_g1_i2
409bp
 ATP-binding_cassette_sub-family_D_member_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005324 F long-chain fatty acid transporter activity
GO:0005325 F long-chain fatty acid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0015910 P long-chain fatty acid import into peroxisome
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042758 P long-chain fatty acid catabolic process
GO:0042760 P very long-chain fatty acid catabolic process
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0048471 C perinuclear region of cytoplasm
GO:0055085 P transmembrane transport
FPKM:5.90 TPM:3.07
748 A_BomoMSG_c10807_g1_i3
210bp
 ATP-binding_cassette_sub-family_D_member_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005324 F long-chain fatty acid transporter activity
GO:0005325 F long-chain fatty acid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0015910 P long-chain fatty acid import into peroxisome
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042758 P long-chain fatty acid catabolic process
GO:0042760 P very long-chain fatty acid catabolic process
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0048471 C perinuclear region of cytoplasm
GO:0055085 P transmembrane transport
FPKM:0.00 TPM:0.00
749 A_BomoMSG_c10808_g1_i1
231bp
FPKM:3.62 TPM:1.88
750 A_BomoMSG_c10809_g1_i1
911bp
 glutathione_peroxidase_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0004602 F glutathione peroxidase activity
GO:0005737 C cytoplasm
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0047066 F phospholipid-hydroperoxide glutathione peroxidase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:49.26 TPM:25.63
previous next from show/47701

- SilkBase 1999-2023 -