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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4351 A_BomoMSG_c14671_g1_i1
203bp
FPKM:4.22 TPM:2.19
4352 A_BomoMSG_c14672_g1_i1
355bp
FPKM:1.37 TPM:0.72
4353 A_BomoMSG_c14672_g1_i2
292bp
FPKM:0.55 TPM:0.28
4354 A_BomoMSG_c14673_g1_i1
346bp
FPKM:3.98 TPM:2.07
4355 A_BomoMSG_c14675_g1_i1
323bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_FAM200A-like,_partial_[Nicrophorus_vespilloides]
FPKM:0.35 TPM:0.18
4356 A_BomoMSG_c14676_g1_i1
426bp
FPKM:3.26 TPM:1.69
4357 A_BomoMSG_c14677_g1_i1
236bp
 retroelement_polyprotein_[Danaus_plexippus_plexippus]
FPKM:4.11 TPM:2.14
4358 A_BomoMSG_c14678_g1_i1
283bp
FPKM:6.27 TPM:3.26
4359 A_BomoMSG_c14679_g1_i1
261bp
FPKM:0.54 TPM:0.28
4360 A_BomoMSG_c14679_g2_i1
320bp
 hypothetical_protein_[Acinetobacter_baumannii]
FPKM:4.94 TPM:2.57
4361 A_BomoMSG_c1467_g1_i1
583bp
 uncharacterized_protein_LOC101745768_[Bombyx_mori]
FPKM:2.77 TPM:1.44
4362 A_BomoMSG_c14680_g1_i1
237bp
 PREDICTED:_zinc_finger_protein_239-like_[Branchiostoma_belcheri]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008340 P determination of adult lifespan
GO:0040035 P hermaphrodite genitalia development
GO:0043053 P dauer entry
GO:0045684 P positive regulation of epidermis development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:1903355 P negative regulation of distal tip cell migration
FPKM:7.46 TPM:3.88
4363 A_BomoMSG_c14681_g1_i1
592bp
 uncharacterized_protein_LOC101736623_isoform_X2_[Bombyx_mori]
FPKM:1.49 TPM:0.78
4364 A_BomoMSG_c14682_g1_i1
253bp
FPKM:4.29 TPM:2.23
4365 A_BomoMSG_c14682_g2_i1
274bp
FPKM:3.37 TPM:1.75
4366 A_BomoMSG_c14683_g1_i1
305bp
FPKM:2.71 TPM:1.41
4367 A_BomoMSG_c14684_g1_i1
346bp
 evolutionarily_conserved_signaling_intermediate_in_Toll_pathway,_mitochondrial_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0008063 P Toll signaling pathway
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0045087 P innate immune response
GO:0051341 P regulation of oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.75 TPM:1.43
4368 A_BomoMSG_c14684_g2_i1
208bp
 evolutionarily_conserved_signaling_intermediate_in_Toll_pathway,_mitochondrial_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0008063 P Toll signaling pathway
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0045087 P innate immune response
GO:0051341 P regulation of oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.98 TPM:0.51
4369 A_BomoMSG_c14685_g1_i1
250bp
FPKM:1.78 TPM:0.93
4370 A_BomoMSG_c14687_g1_i1
220bp
 ATP-binding_cassette_sub-family_D_member_3,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005324 F long-chain fatty acid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005782 C peroxisomal matrix
GO:0005829 C cytosol
GO:0006633 P fatty acid biosynthetic process
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0014070 P response to organic cyclic compound
GO:0015910 P long-chain fatty acid import into peroxisome
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043621 F protein self-association
GO:0055085 P transmembrane transport
FPKM:0.83 TPM:0.43
4371 A_BomoMSG_c14687_g2_i1
361bp
 ATP-binding_cassette_sub-family_D_member_3,_partial_[Bombyx_mori]
FPKM:2.84 TPM:1.48
4372 A_BomoMSG_c14688_g1_i1
496bp
 hypothetical_protein_KGM_208273_[Danaus_plexippus_plexippus]
FPKM:3.81 TPM:1.98
4373 A_BomoMSG_c14689_g1_i1
231bp
 ribosomal_protein_L11,_partial_[Helicoverpa_armigera]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
FPKM:2.90 TPM:1.51
4374 A_BomoMSG_c14691_g1_i1
359bp
 reverse_transcriptase,_partial_[Bombyx_mori]
FPKM:3.16 TPM:1.64
4375 A_BomoMSG_c14696_g1_i1
239bp
FPKM:5.31 TPM:2.76
4376 A_BomoMSG_c14697_g1_i1
588bp
FPKM:2.46 TPM:1.28
4377 A_BomoMSG_c14698_g1_i1
775bp
FPKM:2.97 TPM:1.55
4378 A_BomoMSG_c1469_g1_i1
213bp
 MAU2_chromatid_cohesion_factor_homolog_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0032116 C SMC loading complex
GO:0034088 P maintenance of mitotic sister chromatid cohesion
GO:0051301 P cell division
FPKM:7.28 TPM:3.78
4379 A_BomoMSG_c14701_g1_i1
334bp
FPKM:4.89 TPM:2.54
4380 A_BomoMSG_c14702_g1_i1
564bp
 uncharacterized_protein_LOC101745877_isoform_X1_[Bombyx_mori]
FPKM:3.18 TPM:1.66
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