SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4381 A_BomoMSG_c14703_g1_i1
266bp
 mothers_against_decapentaplegic_homolog_6_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001657 P ureteric bud development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006955 P immune response
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007352 P zygotic specification of dorsal/ventral axis
GO:0008285 P negative regulation of cell population proliferation
GO:0010991 P negative regulation of SMAD protein complex assembly
GO:0030509 P BMP signaling pathway
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0030617 F obsolete transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity
GO:0031589 P cell-substrate adhesion
GO:0031625 F ubiquitin protein ligase binding
GO:0034616 P response to laminar fluid shear stress
GO:0034713 F type I transforming growth factor beta receptor binding
GO:0035904 P aorta development
GO:0042802 F identical protein binding
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043627 P response to estrogen
GO:0044212 F transcription cis-regulatory region binding
GO:0045444 P fat cell differentiation
GO:0046872 F metal ion binding
GO:0060394 P negative regulation of pathway-restricted SMAD protein phosphorylation
GO:0060976 P coronary vasculature development
GO:0070410 F co-SMAD binding
GO:0070411 F I-SMAD binding
GO:0070412 F R-SMAD binding
GO:0070698 F type I activin receptor binding
FPKM:3.60 TPM:1.87
4382 A_BomoMSG_c14705_g1_i1
223bp
 PREDICTED:_uncharacterized_protein_LOC106708887_[Papilio_machaon]
FPKM:0.80 TPM:0.41
4383 A_BomoMSG_c14705_g2_i1
204bp
FPKM:1.04 TPM:0.54
4384 A_BomoMSG_c14706_g1_i1
330bp
FPKM:2.00 TPM:1.04
4385 A_BomoMSG_c1470_g1_i1
214bp
FPKM:3.59 TPM:1.87
4386 A_BomoMSG_c14710_g1_i1
260bp
FPKM:1.08 TPM:0.56
4387 A_BomoMSG_c14712_g1_i1
331bp
 LOW_QUALITY_PROTEIN:_trithorax_group_protein_osa_[Bombyx_mori]
FPKM:2.65 TPM:1.38
4388 A_BomoMSG_c14712_g1_i2
304bp
 LOW_QUALITY_PROTEIN:_trithorax_group_protein_osa_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4389 A_BomoMSG_c14713_g1_i1
258bp
FPKM:0.00 TPM:0.00
4390 A_BomoMSG_c14713_g1_i2
318bp
FPKM:1.43 TPM:0.74
4391 A_BomoMSG_c14714_g1_i1
520bp
FPKM:1.94 TPM:1.01
4392 A_BomoMSG_c14718_g1_i1
507bp
 protein_SMG8_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003674 F molecular_function
GO:0005575 C cellular_component
FPKM:4.53 TPM:2.36
4393 A_BomoMSG_c14720_g1_i1
314bp
FPKM:0.00 TPM:0.00
4394 A_BomoMSG_c14720_g1_i2
369bp
FPKM:1.35 TPM:0.70
4395 A_BomoMSG_c14720_g1_i3
244bp
FPKM:0.03 TPM:0.02
4396 A_BomoMSG_c14721_g1_i1
238bp
FPKM:0.67 TPM:0.35
4397 A_BomoMSG_c14722_g1_i1
404bp
FPKM:2.60 TPM:1.35
4398 A_BomoMSG_c14722_g1_i2
344bp
FPKM:0.00 TPM:0.00
4399 A_BomoMSG_c14723_g1_i1
213bp
FPKM:4.55 TPM:2.37
4400 A_BomoMSG_c14726_g1_i1
403bp
FPKM:3.32 TPM:1.73
4401 A_BomoMSG_c14727_g1_i1
379bp
 abnormal_cell_migration_protein_10_isoform_X2_[Bombyx_mori]
FPKM:2.36 TPM:1.23
4402 A_BomoMSG_c14728_g1_i1
236bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:0.69 TPM:0.36
4403 A_BomoMSG_c14728_g2_i1
248bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:3.63 TPM:1.89
4404 A_BomoMSG_c14729_g1_i1
434bp
 uncharacterized_protein_LOC110386593_[Bombyx_mori]
FPKM:1.27 TPM:0.66
4405 A_BomoMSG_c1472_g1_i1
382bp
 anaphase-promoting_complex_subunit_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051439 P obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 P protein K11-linked ubiquitination
FPKM:3.36 TPM:1.75
4406 A_BomoMSG_c14730_g1_i1
407bp
FPKM:3.73 TPM:1.94
4407 A_BomoMSG_c14733_g1_i1
204bp
 eukaryotic_translation_initiation_factor_4E_transporter_[Bombyx_mori]
FPKM:2.08 TPM:1.08
4408 A_BomoMSG_c14734_g1_i1
2193bp
 PREDICTED:_V-type_proton_ATPase_subunit_H_isoform_X2_[Papilio_polytes]
GO:0000221 C vacuolar proton-transporting V-type ATPase, V1 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016820 F ATPase-coupled transmembrane transporter activity
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
FPKM:31.20 TPM:16.23
4409 A_BomoMSG_c14734_g1_i2
1995bp
 vacuolar_ATP_synthase_subunit_H_[Bombyx_mori]
GO:0000221 C vacuolar proton-transporting V-type ATPase, V1 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016820 F ATPase-coupled transmembrane transporter activity
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
FPKM:34.24 TPM:17.81
4410 A_BomoMSG_c14735_g1_i1
381bp
FPKM:2.34 TPM:1.21
previous next from show/47701

- SilkBase 1999-2023 -