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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4141 A_BomoMSG_c1438_g1_i1
888bp
FPKM:2.68 TPM:1.39
4142 A_BomoMSG_c14390_g1_i1
237bp
 olfactory_receptor_[Bombyx_mori]
FPKM:1.36 TPM:0.71
4143 A_BomoMSG_c14391_g1_i1
455bp
FPKM:5.11 TPM:2.66
4144 A_BomoMSG_c14392_g1_i1
326bp
 Uncharacterized_protein_OBRU01_24343_[Operophtera_brumata]
FPKM:2.38 TPM:1.24
4145 A_BomoMSG_c14393_g1_i1
442bp
 Yokozuna_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.67 TPM:1.39
4146 A_BomoMSG_c14394_g1_i1
633bp
FPKM:2.23 TPM:1.16
4147 A_BomoMSG_c14395_g1_i1
212bp
 target_of_rapamycin_isoform_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001030 F RNA polymerase III type 1 promoter sequence-specific DNA binding
GO:0001031 F RNA polymerase III type 2 promoter sequence-specific DNA binding
GO:0001032 F RNA polymerase III type 3 promoter sequence-specific DNA binding
GO:0001156 F TFIIIC-class transcription factor complex binding
GO:0001933 P negative regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0003007 P heart morphogenesis
GO:0003179 P heart valve morphogenesis
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005979 P regulation of glycogen biosynthetic process
GO:0006109 P regulation of carbohydrate metabolic process
GO:0006112 P energy reserve metabolic process
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006950 P response to stress
GO:0007281 P germ cell development
GO:0007420 P brain development
GO:0007569 P cell aging
GO:0007616 P long-term memory
GO:0008144 F obsolete drug binding
GO:0008542 P visual learning
GO:0009791 P post-embryonic development
GO:0010507 P negative regulation of autophagy
GO:0010592 P positive regulation of lamellipodium assembly
GO:0010628 P positive regulation of gene expression
GO:0010831 P positive regulation of myotube differentiation
GO:0010942 P positive regulation of cell death
GO:0010976 P positive regulation of neuron projection development
GO:0012505 C endomembrane system
GO:0014042 P positive regulation of neuron maturation
GO:0014736 P negative regulation of muscle atrophy
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019901 F protein kinase binding
GO:0019904 F protein domain specific binding
GO:0021510 P spinal cord development
GO:0030030 P cell projection organization
GO:0030425 C dendrite
GO:0030838 P positive regulation of actin filament polymerization
GO:0031397 P negative regulation of protein ubiquitination
GO:0031529 P ruffle organization
GO:0031641 P regulation of myelination
GO:0031669 P cellular response to nutrient levels
GO:0031929 P TOR signaling
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0031998 P regulation of fatty acid beta-oxidation
GO:0032095 P regulation of response to food
GO:0032868 P response to insulin
GO:0032956 P regulation of actin cytoskeleton organization
GO:0032991 C protein-containing complex
GO:0035176 P social behavior
GO:0035264 P multicellular organism growth
GO:0042060 P wound healing
GO:0042220 P response to cocaine
GO:0043022 F ribosome binding
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043200 P response to amino acid
GO:0043278 P response to morphine
GO:0043610 P regulation of carbohydrate utilization
GO:0045429 P positive regulation of nitric oxide biosynthetic process
GO:0045670 P regulation of osteoclast differentiation
GO:0045727 P positive regulation of translation
GO:0045792 P negative regulation of cell size
GO:0045859 P regulation of protein kinase activity
GO:0045945 P positive regulation of transcription by RNA polymerase III
GO:0046777 P protein autophosphorylation
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048255 P mRNA stabilization
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0048714 P positive regulation of oligodendrocyte differentiation
GO:0048738 P cardiac muscle tissue development
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0050769 P positive regulation of neurogenesis
GO:0050882 P voluntary musculoskeletal movement
GO:0051219 F phosphoprotein binding
GO:0051496 P positive regulation of stress fiber assembly
GO:0051534 P negative regulation of calcineurin-NFAT signaling cascade
GO:0051896 P regulation of protein kinase B signaling
GO:0051897 P positive regulation of protein kinase B signaling
GO:0055006 P cardiac cell development
GO:0055013 P cardiac muscle cell development
GO:0060048 P cardiac muscle contraction
GO:0060135 P maternal process involved in female pregnancy
GO:0060252 P positive regulation of glial cell proliferation
GO:0060999 P positive regulation of dendritic spine development
GO:0061051 P positive regulation of cell growth involved in cardiac muscle cell development
GO:0071456 P cellular response to hypoxia
GO:0090335 P regulation of brown fat cell differentiation
GO:0090559 P regulation of membrane permeability
GO:1901216 P positive regulation of neuron death
GO:1901838 P positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
GO:1904000 P positive regulation of eating behavior
GO:1904056 P positive regulation of cholangiocyte proliferation
GO:1904058 P positive regulation of sensory perception of pain
GO:1904193 P negative regulation of cholangiocyte apoptotic process
GO:1904197 P positive regulation of granulosa cell proliferation
GO:1904206 P positive regulation of skeletal muscle hypertrophy
GO:1904213 P negative regulation of iodide transmembrane transport
FPKM:1.84 TPM:0.96
4148 A_BomoMSG_c14395_g2_i1
835bp
 target_of_rapamycin_isoform_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007411 P axon guidance
GO:0007430 P terminal branching, open tracheal system
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0007584 P response to nutrient
GO:0008144 F obsolete drug binding
GO:0008340 P determination of adult lifespan
GO:0008406 P gonad development
GO:0009594 P detection of nutrient
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030307 P positive regulation of cell growth
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032456 P endocytic recycling
GO:0035264 P multicellular organism growth
GO:0040007 P growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042331 P phototaxis
GO:0043621 F protein self-association
GO:0045176 P apical protein localization
GO:0045793 P positive regulation of cell size
GO:0046622 P positive regulation of organ growth
GO:0048142 P germarium-derived cystoblast division
GO:0048813 P dendrite morphogenesis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0090070 P positive regulation of ribosome biogenesis
GO:2000331 P regulation of terminal button organization
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2001023 P regulation of response to drug
FPKM:3.50 TPM:1.82
4149 A_BomoMSG_c14396_g1_i1
2327bp
 nucleoporin_nup189_[Bombyx_mori]
FPKM:115.69 TPM:60.18
4150 A_BomoMSG_c14397_g1_i1
1119bp
 DDRGK_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
FPKM:64.54 TPM:33.58
4151 A_BomoMSG_c14397_g1_i2
1189bp
 DDRGK_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
FPKM:118.88 TPM:61.84
4152 A_BomoMSG_c14398_g1_i1
607bp
 PREDICTED:_uncharacterized_protein_LOC106131368_isoform_X1_[Amyelois_transitella]
FPKM:1.70 TPM:0.89
4153 A_BomoMSG_c14399_g1_i1
348bp
FPKM:1.51 TPM:0.79
4154 A_BomoMSG_c143_g1_i1
565bp
FPKM:1.30 TPM:0.68
4155 A_BomoMSG_c14401_g1_i1
1353bp
 LOW_QUALITY_PROTEIN:_adhesion_G_protein-coupled_receptor_A3_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0009897 C external side of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.74 TPM:0.91
4156 A_BomoMSG_c14402_g1_i1
686bp
 unconventional_myosin-XVIIIa_[Bombyx_mori]
FPKM:7.37 TPM:3.84
4157 A_BomoMSG_c14403_g1_i1
415bp
FPKM:2.02 TPM:1.05
4158 A_BomoMSG_c14404_g1_i1
382bp
 DNA_repair_protein_XRCC2_[Operophtera_brumata]
FPKM:2.58 TPM:1.34
4159 A_BomoMSG_c14405_g1_i1
487bp
 RNA-binding_protein_26_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0006397 P mRNA processing
GO:0010923 P negative regulation of phosphatase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:2.31 TPM:1.20
4160 A_BomoMSG_c14406_g1_i1
271bp
 patronin_isoform_X12_[Bombyx_mori]
FPKM:1.48 TPM:0.77
4161 A_BomoMSG_c14406_g2_i1
368bp
 patronin_isoform_X15_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0030496 C midbody
GO:0030507 F spectrin binding
GO:0031175 P neuron projection development
GO:0051011 F microtubule minus-end binding
GO:0051013 P microtubule severing
FPKM:2.20 TPM:1.14
4162 A_BomoMSG_c14408_g1_i1
232bp
FPKM:11.46 TPM:5.96
4163 A_BomoMSG_c14409_g1_i1
447bp
 LOW_QUALITY_PROTEIN:_collagen_alpha-2(IV)_chain_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0001503 P ossification
GO:0003674 F molecular_function
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005588 C collagen type V trimer
GO:0005788 C endoplasmic reticulum lumen
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0043588 P skin development
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048592 P eye morphogenesis
GO:0071230 P cellular response to amino acid stimulus
GO:1903225 P negative regulation of endodermal cell differentiation
FPKM:1.41 TPM:0.73
4164 A_BomoMSG_c14409_g2_i1
431bp
 LOW_QUALITY_PROTEIN:_collagen_alpha-2(IV)_chain_[Bombyx_mori]
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005604 C basement membrane
FPKM:1.92 TPM:1.00
4165 A_BomoMSG_c14410_g1_i1
267bp
FPKM:2.04 TPM:1.06
4166 A_BomoMSG_c14415_g1_i1
272bp
FPKM:6.36 TPM:3.31
4167 A_BomoMSG_c14417_g1_i1
444bp
 uncharacterized_protein_LOC110380051_[Helicoverpa_armigera]
FPKM:3.06 TPM:1.59
4168 A_BomoMSG_c14418_g1_i1
525bp
 probable_methyltransferase_TARBP1_[Bombyx_mori]
FPKM:5.11 TPM:2.66
4169 A_BomoMSG_c14419_g1_i1
272bp
 chitin_deacetylase_1_[Ostrinia_furnacalis]
FPKM:4.90 TPM:2.55
4170 A_BomoMSG_c1441_g1_i1
816bp
 steroid_receptor_RNA_activator_1_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0008283 P cell population proliferation
GO:0015630 C microtubule cytoskeleton
GO:0016922 F nuclear receptor binding
GO:0030154 P cell differentiation
GO:0030374 F nuclear receptor coactivator activity
GO:0030529 C ribonucleoprotein complex
GO:0042981 P regulation of apoptotic process
GO:0045171 C intercellular bridge
GO:1903506 P regulation of nucleic acid-templated transcription
GO:2000273 P positive regulation of signaling receptor activity
FPKM:51.34 TPM:26.71
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