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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c14409_g1_i1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_collagen_alpha-2(IV)_chain_[Bombyx_mori]
Ontology
GO:0001501 P skeletal system development
GO:0001503 P ossification
GO:0003674 F molecular_function
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005588 C collagen type V trimer
GO:0005788 C endoplasmic reticulum lumen
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0043588 P skin development
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048592 P eye morphogenesis
GO:0071230 P cellular response to amino acid stimulus
GO:1903225 P negative regulation of endodermal cell differentiation
Transcript
Level		FPKM:1.41 TPM:0.73
ORF EntryO_BomoMSG3871_internal:A_BomoMSG_c14409_g1_i1
Sequence
(Nucleotide)
GGAATACCCGGACAAAAAGGAGTTAAGGGTCCTCAAGGAATGCCTGGTTTAAGCATACGA
GGTCCGCCTGGTACTAAAGGTGATAAAGGAGATACAGGTTTCTCAGGGACACCTGGTTTC
CAAGGACCAAGAGGTGCTATAGGTGACAAAGGTTTCCCTGGGCAAACAGGAGAACCAGGT
GAAAAAGGTTTGCCGGGTACTGATGGATTCGCAGGTAAAAATGGATTAATTGGTACGAAA
GGACAGCAGGGTCTATATGGAGCATCAGGTAGAAAGGGTGACCGTGGCGACAGAGGAATG
GATGGTGAGCCTGGACGAATCGGCATTCCGGGATTACCTGGTAATAAAGGTTTTCAAGGA
CCACAAGGACGTATAGGCCCCACAGGAATCAAGGGTGATCGCGGTGATATTGGTAGAACC
ATTTATCTACCAGCTACTAAAGGAGAC
(447 bp)

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