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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3961 A_BomoMSG_c14225_g1_i1
377bp
 reverse_transcriptase,_partial_[Bombyx_mori]
FPKM:0.79 TPM:0.41
3962 A_BomoMSG_c14226_g1_i1
379bp
FPKM:0.00 TPM:0.00
3963 A_BomoMSG_c14226_g1_i2
306bp
FPKM:0.00 TPM:0.00
3964 A_BomoMSG_c14226_g1_i3
646bp
 cell_division_cycle_protein_20_homolog_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008022 F protein C-terminus binding
GO:0008054 P anaphase-promoting complex-dependent catabolic process
GO:0010997 F anaphase-promoting complex binding
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0031915 P positive regulation of synaptic plasticity
GO:0040020 P regulation of meiotic nuclear division
GO:0051301 P cell division
GO:0051488 P positive regulation of ubiquitin protein ligase activity
GO:0090129 P positive regulation of synapse maturation
GO:0097027 F ubiquitin-protein transferase activator activity
GO:1904146 P positive regulation of meiotic cell cycle process involved in oocyte maturation
FPKM:3.75 TPM:1.95
3965 A_BomoMSG_c14227_g1_i1
249bp
FPKM:1.80 TPM:0.94
3966 A_BomoMSG_c14228_g1_i1
239bp
FPKM:6.64 TPM:3.45
3967 A_BomoMSG_c14229_g1_i1
496bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.64 TPM:1.89
3968 A_BomoMSG_c1422_g1_i1
231bp
FPKM:2.17 TPM:1.13
3969 A_BomoMSG_c14230_g1_i1
3243bp
 lamin-C_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005102 F signaling receptor binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005638 C lamin filament
GO:0005652 C nuclear lamina
GO:0005811 C lipid droplet
GO:0005813 C centrosome
GO:0005875 C microtubule associated complex
GO:0005882 C intermediate filament
GO:0006342 P heterochromatin assembly
GO:0006997 P nucleus organization
GO:0006998 P nuclear envelope organization
GO:0007084 P mitotic nuclear membrane reassembly
GO:0007097 P nuclear migration
GO:0007283 P spermatogenesis
GO:0007417 P central nervous system development
GO:0007430 P terminal branching, open tracheal system
GO:0007569 P cell aging
GO:0008285 P negative regulation of cell population proliferation
GO:0008344 P adult locomotory behavior
GO:0016020 C membrane
GO:0031081 P nuclear pore localization
GO:0035262 P gonad morphogenesis
GO:0040003 P chitin-based cuticle development
GO:0046331 P lateral inhibition
GO:0048546 P digestive tract morphogenesis
GO:0050777 P negative regulation of immune response
GO:0051297 P centrosome cycle
GO:0070870 P obsolete heterochromatin maintenance
GO:0071763 P nuclear membrane organization
GO:0072686 C mitotic spindle
GO:0090435 P protein localization to nuclear envelope
FPKM:53.82 TPM:28.00
3970 A_BomoMSG_c14231_g1_i1
400bp
 PREDICTED:_uncharacterized_protein_LOC105389553_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:2.40 TPM:1.25
3971 A_BomoMSG_c14232_g1_i1
244bp
FPKM:7.56 TPM:3.93
3972 A_BomoMSG_c14233_g1_i1
1705bp
 endoplasmic_reticulum_lectin_1_isoform_X1_[Bombyx_mori]
GO:0001948 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030970 P retrograde protein transport, ER to cytosol
GO:0051082 F unfolded protein binding
GO:1904153 P negative regulation of retrograde protein transport, ER to cytosol
FPKM:44.93 TPM:23.37
3973 A_BomoMSG_c14234_g1_i1
1522bp
FPKM:146.79 TPM:76.36
3974 A_BomoMSG_c14235_g1_i1
2172bp
 TRPL_translocation_defect_protein_14_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0035091 F phosphatidylinositol binding
GO:0045494 P photoreceptor cell maintenance
GO:0070300 F phosphatidic acid binding
GO:0071482 P cellular response to light stimulus
GO:0090316 P positive regulation of intracellular protein transport
FPKM:3.03 TPM:1.58
3975 A_BomoMSG_c14235_g1_i2
2198bp
 TRPL_translocation_defect_protein_14_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0035091 F phosphatidylinositol binding
GO:0045494 P photoreceptor cell maintenance
GO:0070300 F phosphatidic acid binding
GO:0071482 P cellular response to light stimulus
GO:0090316 P positive regulation of intracellular protein transport
FPKM:31.39 TPM:16.33
3976 A_BomoMSG_c14235_g1_i3
2160bp
 TRPL_translocation_defect_protein_14_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0035091 F phosphatidylinositol binding
GO:0045494 P photoreceptor cell maintenance
GO:0070300 F phosphatidic acid binding
GO:0071482 P cellular response to light stimulus
GO:0090316 P positive regulation of intracellular protein transport
FPKM:3.15 TPM:1.64
3977 A_BomoMSG_c14236_g1_i1
530bp
FPKM:2.21 TPM:1.15
3978 A_BomoMSG_c14237_g1_i1
247bp
FPKM:9.78 TPM:5.09
3979 A_BomoMSG_c14238_g1_i1
435bp
 trafficking_protein_particle_complex_subunit_10_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0034498 P early endosome to Golgi transport
GO:1990071 C TRAPPII protein complex
FPKM:3.78 TPM:1.97
3980 A_BomoMSG_c14239_g1_i1
1413bp
 multiprotein_bridging_factor_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:82.44 TPM:42.89
3981 A_BomoMSG_c1423_g1_i1
216bp
 serine_proteinase_stubble_[Bombyx_mori]
FPKM:3.49 TPM:1.82
3982 A_BomoMSG_c14241_g1_i1
1247bp
 zonadhesin_isoform_X1_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:72.63 TPM:37.78
3983 A_BomoMSG_c14241_g1_i2
842bp
 zonadhesin_isoform_X1_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:17.60 TPM:9.15
3984 A_BomoMSG_c14242_g1_i1
1947bp
 acidic_leucine-rich_nuclear_phosphoprotein_32_family_member_A_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006913 P nucleocytoplasmic transport
GO:0048471 C perinuclear region of cytoplasm
FPKM:64.40 TPM:33.50
3985 A_BomoMSG_c14243_g1_i1
369bp
FPKM:2.19 TPM:1.14
3986 A_BomoMSG_c14245_g1_i1
300bp
 zinc_finger_protein_678_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.60 TPM:0.83
3987 A_BomoMSG_c14246_g1_i1
204bp
FPKM:3.11 TPM:1.62
3988 A_BomoMSG_c14247_g1_i1
266bp
FPKM:1.54 TPM:0.80
3989 A_BomoMSG_c14248_g1_i1
950bp
 cytosolic_Fe-S_cluster_assembly_factor_nubp1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016226 P iron-sulfur cluster assembly
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
FPKM:20.81 TPM:10.82
3990 A_BomoMSG_c1424_g1_i1
395bp
FPKM:0.73 TPM:0.38
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