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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3901 A_BomoMSG_c14170_g1_i1
292bp
FPKM:8.01 TPM:4.17
3902 A_BomoMSG_c14172_g1_i1
226bp
FPKM:9.99 TPM:5.20
3903 A_BomoMSG_c14173_g1_i1
325bp
FPKM:5.14 TPM:2.67
3904 A_BomoMSG_c14174_g1_i1
571bp
FPKM:2.70 TPM:1.41
3905 A_BomoMSG_c14175_g1_i1
931bp
 lysophospholipid_acyltransferase_1_isoform_X1_[Bombyx_mori]
GO:0003841 F 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006644 P phospholipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0036150 P phosphatidylserine acyl-chain remodeling
GO:0036152 P phosphatidylethanolamine acyl-chain remodeling
GO:0047144 F 2-acylglycerol-3-phosphate O-acyltransferase activity
FPKM:5.67 TPM:2.95
3906 A_BomoMSG_c14176_g1_i1
542bp
 dystrophin,_isoforms_A/C/F/G/H,_partial_[Bombyx_mori]
FPKM:4.28 TPM:2.23
3907 A_BomoMSG_c14177_g1_i1
266bp
FPKM:3.60 TPM:1.87
3908 A_BomoMSG_c14178_g1_i1
617bp
 Tyrosine-protein_phosphatase_Lar_[Danaus_plexippus_plexippus]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0006470 P protein dephosphorylation
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030182 P neuron differentiation
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0050776 P regulation of immune response
GO:0050839 F cell adhesion molecule binding
GO:0097105 P presynaptic membrane assembly
FPKM:2.44 TPM:1.27
3909 A_BomoMSG_c14179_g1_i1
212bp
FPKM:0.92 TPM:0.48
3910 A_BomoMSG_c1417_g1_i1
333bp
FPKM:1.64 TPM:0.85
3911 A_BomoMSG_c14180_g1_i1
672bp
 NADPH-dependent_diflavin_oxidoreductase_1_isoform_X1_[Bombyx_mori]
GO:0003958 F NADPH-hemoprotein reductase activity
GO:0005506 F iron ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008219 P cell death
GO:0010181 F FMN binding
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0036245 P cellular response to menadione
GO:0045111 C intermediate filament cytoskeleton
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.49 TPM:0.78
3912 A_BomoMSG_c14181_g1_i1
293bp
FPKM:1.26 TPM:0.65
3913 A_BomoMSG_c14182_g1_i1
662bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_35_kDa_subunit-related_protein_2_isoform_X1_[Bombyx_mori]
FPKM:5.03 TPM:2.62
3914 A_BomoMSG_c14182_g1_i2
604bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_35_kDa_subunit-related_protein_2_isoform_X1_[Bombyx_mori]
FPKM:0.26 TPM:0.14
3915 A_BomoMSG_c14183_g1_i1
235bp
FPKM:1.39 TPM:0.72
3916 A_BomoMSG_c14184_g1_i1
3279bp
 inner_nuclear_membrane_protein_Man1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0002044 P blood vessel endothelial cell migration involved in intussusceptive angiogenesis
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005637 C nuclear inner membrane
GO:0005639 C integral component of nuclear inner membrane
GO:0006997 P nucleus organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0032926 P negative regulation of activin receptor signaling pathway
GO:0035914 P skeletal muscle cell differentiation
GO:0051726 P regulation of cell cycle
GO:1903053 P regulation of extracellular matrix organization
FPKM:40.34 TPM:20.99
3917 A_BomoMSG_c14184_g1_i2
3256bp
 inner_nuclear_membrane_protein_Man1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0002044 P blood vessel endothelial cell migration involved in intussusceptive angiogenesis
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005637 C nuclear inner membrane
GO:0005639 C integral component of nuclear inner membrane
GO:0006997 P nucleus organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0032926 P negative regulation of activin receptor signaling pathway
GO:0035914 P skeletal muscle cell differentiation
GO:0051726 P regulation of cell cycle
GO:1903053 P regulation of extracellular matrix organization
FPKM:0.00 TPM:0.00
3918 A_BomoMSG_c14185_g1_i1
232bp
FPKM:1.43 TPM:0.75
3919 A_BomoMSG_c14186_g1_i1
816bp
FPKM:2.43 TPM:1.26
3920 A_BomoMSG_c14187_g1_i1
1246bp
 sphingolipid_delta(4)-desaturase_DES1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0030148 P sphingolipid biosynthetic process
GO:0042284 F sphingolipid delta-4 desaturase activity
GO:0046513 P ceramide biosynthetic process
GO:0055114 P obsolete oxidation-reduction process
FPKM:16.99 TPM:8.84
3921 A_BomoMSG_c14188_g1_i1
503bp
FPKM:2.72 TPM:1.41
3922 A_BomoMSG_c14190_g1_i1
247bp
FPKM:4.28 TPM:2.23
3923 A_BomoMSG_c14191_g1_i1
1370bp
 plexin-B_[Bombyx_mori]
GO:0002116 C semaphorin receptor complex
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0030154 P cell differentiation
GO:0030334 P regulation of cell migration
GO:0035021 P negative regulation of Rac protein signal transduction
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071678 P olfactory bulb axon guidance
GO:0097374 P sensory neuron axon guidance
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
FPKM:1.77 TPM:0.92
3924 A_BomoMSG_c14192_g1_i1
691bp
FPKM:86.24 TPM:44.86
3925 A_BomoMSG_c14194_g1_i1
558bp
 small_RNA_2'-O-methyltransferase_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0008168 F methyltransferase activity
GO:0008171 F O-methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0032259 P methylation
GO:0034587 P piRNA metabolic process
GO:0035194 P post-transcriptional gene silencing by RNA
GO:0046872 F metal ion binding
FPKM:3.23 TPM:1.68
3926 A_BomoMSG_c14195_g1_i1
760bp
 trafficking_protein_particle_complex_subunit_8_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0030242 P autophagy of peroxisome
GO:0031410 C cytoplasmic vesicle
GO:0032258 P cytoplasm to vacuole transport by the Cvt pathway
GO:0034497 P protein localization to phagophore assembly site
GO:0044804 P autophagy of nucleus
GO:1990072 C TRAPPIII protein complex
FPKM:3.44 TPM:1.79
3927 A_BomoMSG_c14196_g1_i1
330bp
 LOW_QUALITY_PROTEIN:_ATP-dependent_RNA_helicase_DHX8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:17.65 TPM:9.18
3928 A_BomoMSG_c14197_g1_i1
356bp
FPKM:2.04 TPM:1.06
3929 A_BomoMSG_c14198_g1_i1
1605bp
 facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005351 F carbohydrate:proton symporter activity
GO:0005355 F glucose transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0035428 P hexose transmembrane transport
GO:0046323 P glucose import
GO:0055085 P transmembrane transport
GO:1904659 P glucose transmembrane transport
FPKM:35.02 TPM:18.22
3930 A_BomoMSG_c14199_g1_i1
438bp
 transmembrane_protein_230_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:9.78 TPM:5.09
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